View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10818_low_23 (Length: 297)

Name: NF10818_low_23
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10818_low_23
NF10818_low_23
[»] chr8 (2 HSPs)
chr8 (18-287)||(8622462-8622731)
chr8 (191-238)||(26975542-26975589)
[»] scaffold0036 (1 HSPs)
scaffold0036 (156-281)||(79714-79839)
[»] chr7 (1 HSPs)
chr7 (156-279)||(22901956-22902079)
[»] chr3 (3 HSPs)
chr3 (161-282)||(47395559-47395680)
chr3 (191-282)||(22495060-22495150)
chr3 (194-277)||(36834131-36834214)
[»] chr2 (5 HSPs)
chr2 (159-292)||(19267474-19267607)
chr2 (159-277)||(40330237-40330355)
chr2 (159-292)||(3777005-3777138)
chr2 (159-277)||(35133190-35133308)
chr2 (188-277)||(41985542-41985631)
[»] scaffold1892 (1 HSPs)
scaffold1892 (191-271)||(374-454)
[»] chr1 (1 HSPs)
chr1 (154-294)||(28562107-28562247)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 8622462 - 8622731
Alignment:
Q  18 gtttgaaacgaattttaatatacataacaatacagctgttgacttcctacattttacactagagaggggggagagagcaatttgtaaataaaaaacaaaa 117  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||   ||||||||||||||||||||||||||||||||||||||||    
T  8622462 gtttgaaacgaattttaatatacttaacaatacagctgttgacttcctacattacactagagagaggggggagagagcaatttgtaaataaaaaacaaaa 8622561  T
Q  118 ttgaataatcacatatttcttaaccaattgcttttatctaattcaagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcaga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  8622562 ttgaataatcacatatttcttaaccaattgcttttatctaattcaagatattaaagatctcttgtcaacaaggaatttctccattcactattgcctcaga 8622661  T
Q  218 gaaaggaaccaatatgcagatcttttagccaagctcggtgccacatcgaatgaagaattttctacctatg 287  Q
    |||  ||| |||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  8622662 gaagagaatcaatgtgcagatcttttagccaaactcggtgccacattgaatgaagaattttctacttatg 8622731  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 26975542 - 26975589
Alignment:
Q  191 aatttctccattcaccattgcctcagagaaaggaaccaatatgcagat 238  Q
    |||||| |||||||||||||||| |||||| ||||||||| |||||||    
T  26975542 aatttcaccattcaccattgcctaagagaagggaaccaatgtgcagat 26975589  T

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Target: scaffold0036 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 79714 - 79839
Alignment:
Q  156 taattcaagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcgg 255  Q
    ||||||||||||| || |||||||| || |  |||||||  ||||| | |||||| ||||||||| ||||||||| ||| ||| || |||| ||||||||    
T  79714 taattcaagatatcaaggatctcttatccacaaggaattcatccatcctccattggctcagagaagggaaccaatgtgctgattttctagctaagctcgg 79813  T
Q  256 tgccacatcgaatgaagaattttcta 281  Q
    |||||||||||||||||| |||||||    
T  79814 tgccacatcgaatgaagagttttcta 79839  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 279
Target Start/End: Complemental strand, 22902079 - 22901956
Alignment:
Q  156 taattcaagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcgg 255  Q
    ||||||||||||| ||||||||||||||    ||||||||| || |||| ||||| || |||||| | ||||| | ||| ||| ||||||| ||||||||    
T  22902079 taattcaagatatcaaagatctcttgtcttcaaggaatttcaccgttcatcattgtctaagagaaggaaaccattgtgctgattttttagctaagctcgg 22901980  T
Q  256 tgccacatcgaatgaagaattttc 279  Q
    |||||  |||||||||||||||||    
T  22901979 tgccatttcgaatgaagaattttc 22901956  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 282
Target Start/End: Complemental strand, 47395680 - 47395559
Alignment:
Q  161 caagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgcca 260  Q
    ||||||||||| |||||||| || |  || ||||||||| || | || || ||||||||| |||| |||| ||||||  ||||||| |||||||| ||||    
T  47395680 caagatattaaggatctcttttccacaagcaatttctccgtttatcactgtctcagagaagggaatcaatgtgcagactttttagctaagctcggagcca 47395581  T
Q  261 catcgaatgaagaattttctac 282  Q
    | ||||||||||||||||||||    
T  47395580 cctcgaatgaagaattttctac 47395559  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 22495060 - 22495150
Alignment:
Q  191 aatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgccacatcgaatgaagaattttctac 282  Q
    |||| |||||||||||||||  |||||||| ||||| ||| | ||||| ||||||| || ||||||||||| ||||||||||| ||||||||    
T  22495060 aattactccattcaccattgtatcagagaagggaac-aatgtacagattttttagctaaactcggtgccacttcgaatgaagagttttctac 22495150  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 277
Target Start/End: Complemental strand, 36834214 - 36834131
Alignment:
Q  194 ttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgccacatcgaatgaagaattt 277  Q
    ||||||||||| ||||||||| ||||| |||| |||| ||||||  | || || ||||| || ||||| |||||||||||||||    
T  36834214 ttctccattcatcattgcctcggagaagggaatcaatgtgcagacttcttggctaagcttggagccacctcgaatgaagaattt 36834131  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 292
Target Start/End: Original strand, 19267474 - 19267607
Alignment:
Q  159 ttcaagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgc 258  Q
    ||||||| || ||||||||||||||    ||||||||| || |||| |||||||| |||||| | ||||| | ||| ||| ||||||| || ||||||||    
T  19267474 ttcaagacatcaaagatctcttgtcctcaaggaatttcaccgttcatcattgcctaagagaaggaaaccagtgtgctgattttttagctaaactcggtgc 19267573  T
Q  259 cacatcgaatgaagaattttctacctatgctact 292  Q
    ||| ||||||||||||||||| || |||| ||||    
T  19267574 cacttcgaatgaagaattttcaacttatgatact 19267607  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 40330237 - 40330355
Alignment:
Q  159 ttcaagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgc 258  Q
    |||||||||| | ||||||||||||    ||||||||| || |||| ||||| || |||||| | ||||||| ||| ||| ||||||| ||||||| |||    
T  40330237 ttcaagatatcagagatctcttgtcctcaaggaatttcaccgttcatcattgtctaagagaaggaaaccaatgtgctgattttttagctaagctcgatgc 40330336  T
Q  259 cacatcgaatgaagaattt 277  Q
    ||| |||||||||||||||    
T  40330337 cacttcgaatgaagaattt 40330355  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 292
Target Start/End: Complemental strand, 3777138 - 3777005
Alignment:
Q  159 ttcaagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgc 258  Q
    ||||||| || | ||||||||||||    ||||||||| || |||| |||||||| |||||| | ||||| | ||| ||| ||||||| || ||||||||    
T  3777138 ttcaagacatcagagatctcttgtcctcaaggaatttcaccgttcatcattgcctaagagaaggaaaccagtgtgctgattttttagctaaactcggtgc 3777039  T
Q  259 cacatcgaatgaagaattttctacctatgctact 292  Q
    ||| ||||||||||||||||| || |||| ||||    
T  3777038 cacttcgaatgaagaattttcaacttatgatact 3777005  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 35133308 - 35133190
Alignment:
Q  159 ttcaagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgc 258  Q
    |||||||||| | ||||||||||||    ||||||||| ||||||| ||||| || |||||| | ||||| | ||| ||| ||||||| || ||||||||    
T  35133308 ttcaagatatcagagatctcttgtcctcaaggaatttcaccattcatcattgtctaagagaaggaaaccagtgtgctgattttttagctaaactcggtgc 35133209  T
Q  259 cacatcgaatgaagaattt 277  Q
    ||| |||||||| ||||||    
T  35133208 cacttcgaatgatgaattt 35133190  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 41985542 - 41985631
Alignment:
Q  188 aggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgccacatcgaatgaagaattt 277  Q
    ||||||||| || |||| ||||| || |||||| | ||||| | ||| ||| ||||||| |||||| ||||||| |||||||||||||||    
T  41985542 aggaatttcaccgttcatcattgtctaagagaaggaaaccagtgtgctgattttttagctaagctcagtgccacctcgaatgaagaattt 41985631  T

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Target: scaffold1892 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1892
Description:

Target: scaffold1892; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 454 - 374
Alignment:
Q  191 aatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgccacatcgaatgaa 271  Q
    |||| ||||||||||||||| ||||||||| |||||||||  || ||| ||||||| || ||| |||||||||||||||||    
T  454 aattactccattcaccattgtctcagagaagggaaccaatgggctgattttttagctaaactctgtgccacatcgaatgaa 374  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 294
Target Start/End: Complemental strand, 28562247 - 28562107
Alignment:
Q  154 tctaattcaagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctc 253  Q
    |||||||||||| || ||||| ||||| ||||  || ||||||||||| || ||||| || |||||| ||||||||| ||| ||| | || || |||||     
T  28562247 tctaattcaagacatcaaagacctcttttcaacaagaaatttctccatccatcattgtctaagagaagggaaccaatgtgccgatttatttgcaaagcta 28562148  T
Q  254 ggtgccacatcgaatgaagaattttctacctatgctactcc 294  Q
    || |||||||| |||||||| ||| |||| |||| ||||||    
T  28562147 ggagccacatctaatgaagagtttactacttatgttactcc 28562107  T

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