View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_24 (Length: 292)
Name: NF10818_low_24
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 42009958 - 42010220
Alignment:
| Q |
14 |
agaggaccgtattcttgatcagatcagagacttatctgaaaggaataatactgctcacgcttcaacgactgaatccggtgctagaattactatctcgagg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42009958 |
agaggaccgtattcttgatcagatcagagacttatctgaaaggaataatactgctcacgcttcaacgactgaatccggtgctagaattaccatctcgagg |
42010057 |
T |
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| Q |
114 |
gaggaatatgagtccttaaaccgcagagctgaggagtgtgataaactagcgagtgcaaaagtggcggctgcgacagcacatattgaagctgcaaagctca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010058 |
gaggaatatgagtccttaaaccgcagagctgaggagtgtgataaactagcgagtgcaaaagtggcggctgcgacagcacatattgaagctgcaaagctca |
42010157 |
T |
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| Q |
214 |
gtgaaaatgaggctctcataaagttagaggcaactcagatggaaattgaggatataaagaaag |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010158 |
gtgaaaatgaggctctcataaagttagaggcaactcagatggaaattgaggatataaagaaag |
42010220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 1245296 - 1245558
Alignment:
| Q |
14 |
agaggaccgtattcttgatcagatcagagacttatctgaaaggaataatactgctcacgcttcaacgactgaatccggtgctagaattactatctcgagg |
113 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245296 |
agaggaccgtattcatgatcagatcagagacttatccgaaaggaataatactgctcacgcttcaacgactgaatccggtgctagaattactatctcgagg |
1245395 |
T |
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| Q |
114 |
gaggaatatgagtccttaaaccgcagagctgaggagtgtgataaactagcgagtgcaaaagtggcggctgcgacagcacatattgaagctgcaaagctca |
213 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245396 |
gaggaatatgagtccttaaactgcagagctgaggagtgtgataaactagcgagtgcaaaagtggcggctgcgacagcacatattgaagctgcaaagctca |
1245495 |
T |
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| Q |
214 |
gtgaaaatgaggctctcataaagttagaggcaactcagatggaaattgaggatataaagaaag |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245496 |
gtgaaaatgaggctctcataaagttagaggcaactcagatggaaattgaggatataaagaaag |
1245558 |
T |
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