View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_27 (Length: 276)
Name: NF10818_low_27
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 36370025 - 36369783
Alignment:
| Q |
17 |
atttttatctcttcaatatcactatttttgcagccattaatataatgtaattgaaatgaatataaagaggtgaaggatgttttcacttcttgaatcagta |
116 |
Q |
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| T |
36370025 |
atttttatcacttcaatatcactatttttgcagccattaatataatgtaattgaaatgaatataaagagatgaaggatgttttcacttcttgaatcagta |
36369926 |
T |
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| Q |
117 |
gctcaatgtagagttgcacttaattaccttatagacagagccaaatccaccttgtccaagcttattctcatgactaaaatttgttgtagctgttattatt |
216 |
Q |
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| T |
36369925 |
gctcaatgtagagttgcacttaattaccttatagacagagccaaatccaccttgtccaagcttattctcatgactaaaatttgttgtagctgttataatt |
36369826 |
T |
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| Q |
217 |
gttctaaagctgaagaatggtagatttgaatgtgtgttgcttt |
259 |
Q |
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| T |
36369825 |
gttctaaagctgaagaatggatgatttgaatgtgtgtagcttt |
36369783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 57 - 259
Target Start/End: Complemental strand, 36388942 - 36388740
Alignment:
| Q |
57 |
tataatgtaattgaaatgaatataaagaggtgaaggatgttttcacttcttgaatcagtagctcaatgtagagttgcacttaattaccttatagacagag |
156 |
Q |
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| T |
36388942 |
tataatgctattgaaatgaatataaagaggtgaaggatgtattcacttcttgattcagtagctcaatgtagagttgcacttaattaccttatagacagag |
36388843 |
T |
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| Q |
157 |
ccaaatccaccttgtccaagcttattctcatgactaaaatttgttgtagctgttattattgttctaaagctgaagaatggtagatttgaatgtgtgttgc |
256 |
Q |
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| T |
36388842 |
ccaaatccaccttgtccaagcttattctcatgaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtgtgttgc |
36388743 |
T |
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| Q |
257 |
ttt |
259 |
Q |
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||| |
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| T |
36388742 |
ttt |
36388740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 66 - 259
Target Start/End: Complemental strand, 36375210 - 36375021
Alignment:
| Q |
66 |
attgaaatgaatataaagaggtgaaggatgttttcacttcttgaatcagtagctcaatgtagagttgcacttaattaccttatagacagagccaaatcca |
165 |
Q |
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| T |
36375210 |
attgaaatgaatataaagaggctaaggatattgtcactttttgcatgagtatctcaatgtagagtttcactta----ccttatagacagagccaaatcca |
36375115 |
T |
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| Q |
166 |
ccttgtccaagcttattctcatgactaaaatttgttgtagctgttattattgttctaaagctgaagaatggtagatttgaatgtgtgttgcttt |
259 |
Q |
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| T |
36375114 |
ccttgtccaagcttattctgatgactaaaatctcttgtagctgttataatcgttttaaagctgaaaaagggaagatttggatgtgtgttgcttt |
36375021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 66 - 259
Target Start/End: Complemental strand, 36428316 - 36428127
Alignment:
| Q |
66 |
attgaaatgaatataaagaggtgaaggatgttttcacttcttgaatcagtagctcaatgtagagttgcacttaattaccttatagacagagccaaatcca |
165 |
Q |
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| T |
36428316 |
attgaaatgaatataaagaggctaaggatattgtcactttttgcatgagtatctcaatgtagagtttcactta----ccttatagacagaaccaaatcca |
36428221 |
T |
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| Q |
166 |
ccttgtccaagcttattctcatgactaaaatttgttgtagctgttattattgttctaaagctgaagaatggtagatttgaatgtgtgttgcttt |
259 |
Q |
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| T |
36428220 |
ccttgtccaagcttattctcatgaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtgtgttgcttt |
36428127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 58 - 255
Target Start/End: Complemental strand, 36406259 - 36406066
Alignment:
| Q |
58 |
ataatgtaattgaaatgaatataaagaggtgaaggatgttttcacttcttgaatcagtagctcaatgtagagttgcacttaattaccttatagacagagc |
157 |
Q |
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| T |
36406259 |
ataatgtgattgaaatgaatataaagaggtgactgatgttgtcacttcttgcatcagtagcttaatgtagagtttcactca----ccttgtagacagagc |
36406164 |
T |
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| Q |
158 |
caaatccaccttgtccaagcttattctcatgactaaaatttgttgtagctgttattattgttctaaagctgaagaatggtagatttgaatgtgtgttg |
255 |
Q |
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| T |
36406163 |
caaatccaccttgtccaagcttattcttatgatcacaattttttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtctgttg |
36406066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 58 - 259
Target Start/End: Complemental strand, 36418344 - 36418147
Alignment:
| Q |
58 |
ataatgtaattgaaatgaatataaagaggtgaaggatgttttcacttcttgaatcagtagctcaatgtagagttgcacttaattaccttatagacagagc |
157 |
Q |
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| T |
36418344 |
ataatgcaagtgaaatgaatataaagaggctaaggatattgtcactttttgcatgagtatctcaatgtagagtttcactta----ccttatagacagagc |
36418249 |
T |
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| Q |
158 |
caaatccaccttgtccaagcttattctcatgactaaaatttgttgtagctgttattattgttctaaagctgaagaatggtagatttgaatgtgtgttgct |
257 |
Q |
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| T |
36418248 |
caaatccaccttgtccaagcttattctcaagatcacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgcgtgttgct |
36418149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 92 - 259
Target Start/End: Complemental strand, 36434819 - 36434656
Alignment:
| Q |
92 |
gatgttttcacttcttgaatcagtagctcaatgtagagttgcacttaattaccttatagacagagccaaatccaccttgtccaagcttattctcatgact |
191 |
Q |
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| T |
36434819 |
gatgttttcacttcttgcaatagtagctcaatgtagggt----ctcacttaccttatagacagagccaaatccaccttgtccaagcttattctcatgacc |
36434724 |
T |
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| Q |
192 |
aaaatttgttgtagctgttattattgttctaaagctgaagaatggtagatttgaatgtgtgttgcttt |
259 |
Q |
| |
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| T |
36434723 |
acaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtgtgttgcttt |
36434656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 259
Target Start/End: Complemental strand, 36398470 - 36398328
Alignment:
| Q |
113 |
agtagctcaatgtagagttgcacttaattaccttatagacagagccaaatccaccttgtccaagcttattctcatgactaaaatttgttgtagctgttat |
212 |
Q |
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| T |
36398470 |
agtagctcaatgtagaggt----ttacttaccttataaacagagccaaatccacctttcccaagcttattctgatgactgcaatatcttgtagctgacat |
36398375 |
T |
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| Q |
213 |
tattgttctaaagctgaagaatggtagatttgaatgtgtgttgcttt |
259 |
Q |
| |
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||| ||| ||| |||||| || |||||||||| ||||||| |||||| |
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| T |
36398374 |
tatcgttttaaggctgaaaaagggtagatttggatgtgtggtgcttt |
36398328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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