View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_29 (Length: 273)
Name: NF10818_low_29
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 41446106 - 41445847
Alignment:
| Q |
1 |
tttggtgcttttgtcaatctcacacacctcaacttgtctgataccgagattcaaggtgaagtttcttcctgtatctcacacctttctaacttagtgtcac |
100 |
Q |
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| T |
41446106 |
tttggtgcttttgtcaatctcacacacctcaacttgtctgataccgagattcaaggtgaagtttcttcctgtatctcacacctttctaacttagtgtcac |
41446007 |
T |
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| Q |
101 |
ttgatctctccatgaatgacaatttaaagtggatacaagaagtcactttgaagaggctgctgcaaaatgcaacatctttgacagagagcttgtttttgac |
200 |
Q |
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| T |
41446006 |
ttgatctctccatgaatgacaatttaaagtggatacaagaagtcactttgaagaggctgctgcaaaatgaaacatctttgacagagagcttgtttttgac |
41445907 |
T |
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| Q |
201 |
catacaaacatgtctttcatcgcgccaagctcannnnnnncatttcttaatctatcttct |
260 |
Q |
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| T |
41445906 |
catacaaacatgtctttcatcgcgccaagctcatttttttcatttcttaatctatcttct |
41445847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 41433382 - 41433125
Alignment:
| Q |
1 |
tttggtgcttttgtcaatctcacacacctcaacttgtctgataccgagattcaaggtgaagtttcttcctgtatctcacacctttctaacttagtgtcac |
100 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || ||||||| |
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| T |
41433382 |
tttggtgcttttgtcaatcttacacacctcgacttgtctgataccaagattcaaggtgaagtttcttcctatatctcacacctttctaaattggtgtcac |
41433283 |
T |
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| Q |
101 |
ttgatctctccatgaatgacaatttaaagtggatacaagaagtcactttgaagaggctgctgcaaaatgcaacatctttgacagagagcttgtttttgac |
200 |
Q |
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| T |
41433282 |
ttgatctctccatgaatgacgatttaaagtggatacaagaagtcactttgaagaggctgctgcaaaatgcaacatctttgac--agagcttgtttttgac |
41433185 |
T |
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| Q |
201 |
catacaaacatgtctttcatcgcgccaagctcannnnnnncatttcttaatctatcttct |
260 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
41433184 |
catacaaacatgtctttcattgcgccaagctcatttttttcatttcttaatctatcttct |
41433125 |
T |
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