View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_3 (Length: 443)
Name: NF10818_low_3
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 48826023 - 48825581
Alignment:
| Q |
1 |
tgtgtcattacctctctctctgcgctgcgacagtaagctcttcttctccattgcaattcatttgatttga--------------aatgttatacatataa |
86 |
Q |
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| T |
48826023 |
tgtgtcattacctctctctctgcgctgcgacagtaagctcttcttctccattgcaattcatttgatttgatagttcagtagaaaaatgttatacata--a |
48825926 |
T |
|
| Q |
87 |
ttggtttaggattgggcaacgagcaagatatcactctcaaaggtttacaagctattcatatataaatgcgacaaagtttacatggaagcttacacttccc |
186 |
Q |
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| T |
48825925 |
ttggtttaggattgggcaacgagcaagatatcactctcaaaggtttacaagctattcata----aatgcgacaaagtttacatggaagcttacacttccc |
48825830 |
T |
|
| Q |
187 |
tcctctccttcggcctctctttaaacggcctctccaacttagaaaaactatatggtaaacccattacacttgccgatagagaaatggttgaagaaaaagt |
286 |
Q |
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| T |
48825829 |
tcctctccttcggcctctcttcaaaaggcctctccaacttagaaaaactatatggtaaacccattacacttgccgatagagaaatggttgaagaaaaagt |
48825730 |
T |
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| Q |
287 |
tgatgttattctatctcaa---------cctcatgttgctttccttgttgttgtgtatgtatgtatgctatatcaccctccttcaacattttaattgttt |
377 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48825729 |
tgatgttattctatctcaagctcatctttctcatgttgctttccttgttgttgtgtatgtatgtatgctatatcaccctcc--------tttaattgttt |
48825638 |
T |
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| Q |
378 |
tgcttcagtttcttatttttg--tattcttcccagggctactactcacactgttctt |
432 |
Q |
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| T |
48825637 |
tgcttcagtttcttatttctgtatattcttcccagggctactactcacactgttctt |
48825581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 70 - 298
Target Start/End: Complemental strand, 53054339 - 53054117
Alignment:
| Q |
70 |
aaatgttatacatataattggtttaggattgggcaacgagcaagatatcactctcaaaggtttacaagctattcatatataaatgcgacaaagtttacat |
169 |
Q |
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|||||||||||||| || |||||||| |||||| | ||||||||||| || |||||||||||| |||||||||| | |||||||||| |||||||| |
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| T |
53054339 |
aaatgttatacata--atcggtttagggttgggcgatgagcaagatattacactcaaaggtttagaagctattcaaa----aatgcgacaaggtttacat |
53054246 |
T |
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| Q |
170 |
ggaagcttacacttccctcctctccttcggcctctctttaaacggcctctccaacttagaaaaactatatggtaaacccattacacttgccgatagagaa |
269 |
Q |
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| T |
53054245 |
ggaagcttacacttcccttctctccttcggtctctcttcacacggcctctccaacctcgaaaaactatacggtaaacccattattcttgccgatagagaa |
53054146 |
T |
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| Q |
270 |
atggttgaagaaaaagttgatgttattct |
298 |
Q |
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| T |
53054145 |
atggttgaagaaaaagcggatgatattct |
53054117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 163 - 298
Target Start/End: Original strand, 53341292 - 53341427
Alignment:
| Q |
163 |
tttacatggaagcttacacttccctcctctccttcggcctctctttaaacggcctctccaacttagaaaaactatatggtaaacccattacacttgccga |
262 |
Q |
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||||||||||||||||||||||||| | ||||||||| ||||||| | |||||||||||||| | ||||||||||| ||||||||||||||||||||||| |
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| T |
53341292 |
tttacatggaagcttacacttcccttccctccttcggtctctcttcatacggcctctccaaccttgaaaaactatacggtaaacccattacacttgccga |
53341391 |
T |
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| Q |
263 |
tagagaaatggttgaagaaaaagttgatgttattct |
298 |
Q |
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||||||||||||||||||||||| |||| |||||| |
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| T |
53341392 |
tagagaaatggttgaagaaaaagcggatgatattct |
53341427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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