View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10818_low_30 (Length: 272)

Name: NF10818_low_30
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10818_low_30
NF10818_low_30
[»] chr3 (2 HSPs)
chr3 (1-167)||(30742299-30742465)
chr3 (224-255)||(43183919-43183950)
[»] chr4 (3 HSPs)
chr4 (1-167)||(30142244-30142410)
chr4 (9-167)||(19800443-19800617)
chr4 (224-255)||(407761-407792)
[»] chr5 (3 HSPs)
chr5 (1-167)||(22303222-22303388)
chr5 (224-255)||(739848-739879)
chr5 (224-255)||(27278621-27278652)
[»] chr8 (1 HSPs)
chr8 (224-255)||(9734262-9734293)
[»] chr2 (1 HSPs)
chr2 (224-255)||(5726135-5726166)
[»] chr1 (1 HSPs)
chr1 (224-255)||(43251718-43251749)
[»] chr6 (1 HSPs)
chr6 (224-256)||(19281198-19281230)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 30742465 - 30742299
Alignment:
Q  1 taatcgcattttgttccagacgttattttaaataattaatttcaaggcaacatttgtttttcggcccgatacttgttaaggcccgtttttcccatgtaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30742465 taatcgcattttgttccagacgttattttaaataattaatttcgaggcaacatttgtttttcggcccgatacttg-taaggcccgtttttcccatgtaag 30742367  T
Q  101 at-aaaactaaaaaacacagctagggctgctcattcttcattcacgtttcagaaaatagaaaccctaa 167  Q
    || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30742366 ataaaaactaaaaaacacagctagggctgctcattctgcattcacgtttcagaaaatagaaaccctaa 30742299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 255
Target Start/End: Original strand, 43183919 - 43183950
Alignment:
Q  224 ctagattacctttgaagaatggtgagtaattt 255  Q
    ||||||||||||||||||||||||||||||||    
T  43183919 ctagattacctttgaagaatggtgagtaattt 43183950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 30142244 - 30142410
Alignment:
Q  1 taatcgcattttgttccagacgttattttaaataattaatttcaaggcaacatttgtttttcggcccgatacttgttaaggcccgtttttcccatgtaag 100  Q
    ||||||| ||||||||||||| ||||||||||||||||||||  || |||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  30142244 taatcgcgttttgttccagacattattttaaataattaattttgagacaacatttgtttttcggcccgatacttg-taaggcccgtttttcccatgtaat 30142342  T
Q  101 at-aaaactaaaaaacacagctagggctgctcattcttcattcacgtttcagaaaatagaaaccctaa 167  Q
    || ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  30142343 ataaaaactacaaaacacagctagggctgctcagtctgcattcacgtttcagaaaatagaaaccctaa 30142410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 19800443 - 19800617
Alignment:
Q  9 ttttgttccagacgttattttaaataattaatttcaaggcaacatttgtttttcggcccgatacttgttaaggcccgtttttcccatgtaagat-aaaac 107  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||    
T  19800443 ttttgttccagacgttattttaaataattaatttcgagacaacatttgtttttcggcccgatactcg-taaggcccgtttttcccatgtaatataaaaac 19800541  T
Q  108 taaaaaacacagc----------------tagggctgctcattcttcattcacgtttcagaaaatagaaaccctaa 167  Q
    |||||||||||||                |||||||||||||||| |||||||||||||||||||||||| |||||    
T  19800542 taaaaaacacagctcattctgcattcacgtagggctgctcattctgcattcacgtttcagaaaatagaaatcctaa 19800617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 255
Target Start/End: Original strand, 407761 - 407792
Alignment:
Q  224 ctagattacctttgaagaatggtgagtaattt 255  Q
    ||||||||||||||||||||||||||||||||    
T  407761 ctagattacctttgaagaatggtgagtaattt 407792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 22303222 - 22303388
Alignment:
Q  1 taatcgcattttgttccagacgttattttaaataattaatttcaaggcaacatttgtttttcggcccgatacttgttaaggcccgtttttcccatgtaag 100  Q
    ||||||| ||||||||||||||||||||| ||||||||||||  || ||||||||||||||||||||||||||||  ||| |||||| |||||||||||     
T  22303222 taatcgcgttttgttccagacgttattttgaataattaattttgagacaacatttgtttttcggcccgatacttgcaaag-cccgttgttcccatgtaat 22303320  T
Q  101 ataaaa-ctaaaaaacacagctagggctgctcattcttcattcacgtttcagaaaatagaaaccctaa 167  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22303321 ataaaaactaaaaaacacagctagggctgctcattctgcattcacgtttcagaaaatagaaaccctaa 22303388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 255
Target Start/End: Complemental strand, 739879 - 739848
Alignment:
Q  224 ctagattacctttgaagaatggtgagtaattt 255  Q
    ||||||||||||||||||||||||||||||||    
T  739879 ctagattacctttgaagaatggtgagtaattt 739848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 255
Target Start/End: Complemental strand, 27278652 - 27278621
Alignment:
Q  224 ctagattacctttgaagaatggtgagtaattt 255  Q
    ||||||||||||||||||||||||||||||||    
T  27278652 ctagattacctttgaagaatggtgagtaattt 27278621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 255
Target Start/End: Original strand, 9734262 - 9734293
Alignment:
Q  224 ctagattacctttgaagaatggtgagtaattt 255  Q
    ||||||||||||||||||||||||||||||||    
T  9734262 ctagattacctttgaagaatggtgagtaattt 9734293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 255
Target Start/End: Original strand, 5726135 - 5726166
Alignment:
Q  224 ctagattacctttgaagaatggtgagtaattt 255  Q
    ||||||||||||||||||||||||||||||||    
T  5726135 ctagattacctttgaagaatggtgagtaattt 5726166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 255
Target Start/End: Original strand, 43251718 - 43251749
Alignment:
Q  224 ctagattacctttgaagaatggtgagtaattt 255  Q
    ||||||||||||||||||||||||||||||||    
T  43251718 ctagattacctttgaagaatggtgagtaattt 43251749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 19281230 - 19281198
Alignment:
Q  224 ctagattacctttgaagaatggtgagtaatttg 256  Q
    |||||||||||||||||||||||| ||||||||    
T  19281230 ctagattacctttgaagaatggtgggtaatttg 19281198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University