View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_31 (Length: 270)
Name: NF10818_low_31
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 16594566 - 16594803
Alignment:
| Q |
18 |
cgaacttgactgtttctcttaaccatttctcattctaggcattataaaatagaaattcttagagataaattccaaatctcttaagatttgctcgcaaaac |
117 |
Q |
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| T |
16594566 |
cgaacttgactgtttctcttaaccatttctcattctaggcattataaaatagaaattcttagagataaattccaaatcccttaagatttgctcgcaaaac |
16594665 |
T |
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| Q |
118 |
atcccaaactctctttcgcatcatggctccaaccccaaatttctgcatcttcatgagcaatgaagacttcttcaaactgaaggctaaagatccttttatg |
217 |
Q |
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| T |
16594666 |
atcccaaactctctttcgcatcatggctccaacctcaaatttctgcatcttcatgagcaatgaagacttcttcaaactgaaggctaaagatccttttatg |
16594765 |
T |
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| Q |
218 |
gccttgaagctcattatagagagtaacataccttcctc |
255 |
Q |
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| T |
16594766 |
gccttgaagctcattatagagagtaacataccttcctc |
16594803 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 22618022 - 22617959
Alignment:
| Q |
192 |
aactgaaggctaaagatccttttatggccttgaagctcattatagagagtaacataccttcctc |
255 |
Q |
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||||||| |||||||||| | ||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
22618022 |
aactgaaagctaaagatcgtcctatggccttgaggctcattatagagattaacataccttcctc |
22617959 |
T |
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