View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10818_low_34 (Length: 256)

Name: NF10818_low_34
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10818_low_34
NF10818_low_34
[»] chr8 (3 HSPs)
chr8 (1-189)||(33522297-33522485)
chr8 (210-249)||(33522522-33522561)
chr8 (134-166)||(27049312-27049344)
[»] chr4 (3 HSPs)
chr4 (11-123)||(55448581-55448692)
chr4 (134-162)||(44119260-44119288)
chr4 (134-162)||(49803155-49803183)
[»] chr7 (1 HSPs)
chr7 (134-162)||(3968293-3968321)
[»] chr6 (2 HSPs)
chr6 (134-162)||(2023727-2023755)
chr6 (134-162)||(9559639-9559667)
[»] chr5 (2 HSPs)
chr5 (7-59)||(7045007-7045059)
chr5 (134-166)||(18704129-18704161)
[»] chr1 (1 HSPs)
chr1 (134-162)||(4777383-4777411)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 33522297 - 33522485
Alignment:
Q  1 catcaacatgagttggtttggctttcacaattgataatggccaatcagccattgcacatttgatgcctgcattccacttcccttcccactgcaaagacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33522297 catcaacatgagttggtttggctttcacaattgataatggccaatcagccattgcacatttgatgcctgcattccacttcccttcccactgcaaagacaa 33522396  T
Q  101 agacacacaaattaacatgcatcactttctttttataagttatttctatagcaaaagataaataaacataaagtaaacaactaaatttt 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33522397 agacacacaaattaacatgcatcactttctttttataagttatttctataacaaaagataaataaacataaagtaaacaactaaatttt 33522485  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 33522522 - 33522561
Alignment:
Q  210 ccttgaaccacacagccacaggttcatctacttcatctct 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33522522 ccttgaaccacacagccacaggttcatctacttcatctct 33522561  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 27049312 - 27049344
Alignment:
Q  134 tataagttatttctatagcaaaagataaataaa 166  Q
    ||||| |||||||||||||||||||||||||||    
T  27049312 tataatttatttctatagcaaaagataaataaa 27049344  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 55448581 - 55448692
Alignment:
Q  11 agttggtttggctttcacaattgataatggccaatcagccattgcacatttgatgcctgcattccacttcccttcccactgcaaagacaaagacacacaa 110  Q
    ||||||||||||||| |   |||||||||||||||||||  ||||||||||||| ||||||| ||| ||| ||| ||||||||||||||| || ||| ||    
T  55448581 agttggtttggcttttatggttgataatggccaatcagcacttgcacatttgattcctgcatgccaattctctttccactgcaaagacaatgataca-aa 55448679  T
Q  111 attaacatgcatc 123  Q
    |||||||||||||    
T  55448680 attaacatgcatc 55448692  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Complemental strand, 44119288 - 44119260
Alignment:
Q  134 tataagttatttctatagcaaaagataaa 162  Q
    |||||||||||||||||||||||||||||    
T  44119288 tataagttatttctatagcaaaagataaa 44119260  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Original strand, 49803155 - 49803183
Alignment:
Q  134 tataagttatttctatagcaaaagataaa 162  Q
    |||||||||||||||||||||||||||||    
T  49803155 tataagttatttctatagcaaaagataaa 49803183  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Complemental strand, 3968321 - 3968293
Alignment:
Q  134 tataagttatttctatagcaaaagataaa 162  Q
    |||||||||||||||||||||||||||||    
T  3968321 tataagttatttctatagcaaaagataaa 3968293  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Complemental strand, 2023755 - 2023727
Alignment:
Q  134 tataagttatttctatagcaaaagataaa 162  Q
    |||||||||||||||||||||||||||||    
T  2023755 tataagttatttctatagcaaaagataaa 2023727  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Complemental strand, 9559667 - 9559639
Alignment:
Q  134 tataagttatttctatagcaaaagataaa 162  Q
    |||||||||||||||||||||||||||||    
T  9559667 tataagttatttctatagcaaaagataaa 9559639  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 7045059 - 7045007
Alignment:
Q  7 catgagttggtttggctttcacaattgataatggccaatcagccattgcacat 59  Q
    ||||||||||||| ||| ||| | ||||||||||||| |||||| ||||||||    
T  7045059 catgagttggttttgctctcaaagttgataatggccagtcagcccttgcacat 7045007  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 18704161 - 18704129
Alignment:
Q  134 tataagttatttctatagcaaaagataaataaa 166  Q
    ||||||||||||||||| |||||||||||||||    
T  18704161 tataagttatttctataacaaaagataaataaa 18704129  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Complemental strand, 4777411 - 4777383
Alignment:
Q  134 tataagttatttctatagcaaaagataaa 162  Q
    |||||||||||||||||||||||||||||    
T  4777411 tataagttatttctatagcaaaagataaa 4777383  T

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