View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_36 (Length: 254)
Name: NF10818_low_36
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_36 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 35348172 - 35348412
Alignment:
| Q |
14 |
cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35348172 |
cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt |
35348271 |
T |
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| Q |
114 |
aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatattgtttgggcagaaatgatttcannnnnnncaaagttggttgtgccgg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
35348272 |
aaagttgtttttataggtaaaatatatgatctgaatatttagcttatgaatattgttttggcagaaatgatttcatttttttcaaagttggttgtgccgg |
35348371 |
T |
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| Q |
214 |
cactatctaggtatgtagtttcaatcaaaattgtgatggct |
254 |
Q |
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| T |
35348372 |
cactatctaggtatgtagtttcaatcaaaattgtgatggct |
35348412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 2275230 - 2275470
Alignment:
| Q |
14 |
cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt |
113 |
Q |
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| T |
2275230 |
cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt |
2275329 |
T |
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| Q |
114 |
aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatattgtttgggcagaaatgatttcannnnnnncaaagttggttgtgccgg |
213 |
Q |
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| T |
2275330 |
aaagttgtttttataggtaaaatatatgatctgaatatttagcttatgaatattgttttggcagaaatgatttcatttttttcaaagttggttgtgccgg |
2275429 |
T |
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| Q |
214 |
cactatctaggtatgtagtttcaatcaaaattgtgatggct |
254 |
Q |
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| T |
2275430 |
cactatctaggtatgtagtttcaatcaaaattgtgatggct |
2275470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 39346720 - 39346960
Alignment:
| Q |
14 |
cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt |
113 |
Q |
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| T |
39346720 |
cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt |
39346819 |
T |
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| Q |
114 |
aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatattgtttgggcagaaatgatttcannnnnnncaaagttggttgtgccgg |
213 |
Q |
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| T |
39346820 |
aaagttgtttttataggtaaaatatatgatctgaatatttagcttatgaatattgttttggcagaaatgatttcatttttttcaaagttggttgtgccgg |
39346919 |
T |
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| Q |
214 |
cactatctaggtatgtagtttcaatcaaaattgtgatggct |
254 |
Q |
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| T |
39346920 |
cactatctaggtatgtagtttcaatcaaaattgtgatggct |
39346960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 4012564 - 4012804
Alignment:
| Q |
14 |
cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt |
113 |
Q |
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| T |
4012564 |
cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt |
4012663 |
T |
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| Q |
114 |
aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatattgtttgggcagaaatgatttcannnnnnncaaagttggttgtgccgg |
213 |
Q |
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| T |
4012664 |
aaagttgtttttataggtaaaatatatgatctgaatatttagcttatgaatattgttttggcagaaatgatttcatttttttcaaagttggttgtgccgg |
4012763 |
T |
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| Q |
214 |
cactatctaggtatgtagtttcaatcaaaattgtgatggct |
254 |
Q |
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| T |
4012764 |
cactatctaggtatgtagtttcaatcaaaattgtgatggct |
4012804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 25879434 - 25879672
Alignment:
| Q |
14 |
cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt |
113 |
Q |
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| T |
25879434 |
cagagagtgaagtagtatacagtagtgattttaaaattagtattgaaaagtatagcattgcatttagcaagttgtattcttttgtgtaatattaaaaagt |
25879533 |
T |
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| Q |
114 |
aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatattgtttgggcagaaatgatttcannnnnnncaaagttggttgtgccgg |
213 |
Q |
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| T |
25879534 |
aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatactgttttggtagaaatgattgcattttttt-aaagttggttatgccga |
25879632 |
T |
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| Q |
214 |
cactatctaggtatgtagtttcaatcaaaattgtgatggct |
254 |
Q |
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| T |
25879633 |
cactatcta-taatgtagtttcaatcaaaattgtgatggct |
25879672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 10789967 - 10789729
Alignment:
| Q |
14 |
cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt |
113 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
10789967 |
cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagcaagttgtattcttttgtgtaatattaaaaagt |
10789868 |
T |
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| Q |
114 |
aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatattgtttgggcagaaatgatttcannnnnnncaaagttggttgtgccgg |
213 |
Q |
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| T |
10789867 |
aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatattgttttggcagaaatgattgca-ttttttcaaagttggttatgccgg |
10789769 |
T |
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| Q |
214 |
cactatctaggtatgtagtttcaatcaaaattgtgatggct |
254 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |
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| T |
10789768 |
cactatcta-taatgtagtttcaatcaaaattgtgatggct |
10789729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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