View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_38 (Length: 251)
Name: NF10818_low_38
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 33 - 241
Target Start/End: Complemental strand, 25031894 - 25031686
Alignment:
| Q |
33 |
tatatatatatggaatgttatgtaacatgtgttttgaaaaaactgcagtcttgttggtgcaattcatataatgtttcaaccttcttcaattcatcttcca |
132 |
Q |
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| T |
25031894 |
tatatatatatggaatgttatgtaacatgtgttttgaaaaaactgcagtcttgttggtgcaattcatataatgtttcaaccttcttcaattcatcttcca |
25031795 |
T |
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| Q |
133 |
tcattgaagatgttgaaactcggcgtaggcattgtggaattcgacataggcaacactgtggaattcaacaacatagacactgtggattcattacttgtct |
232 |
Q |
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| T |
25031794 |
tcattgaagatgttgaaactcggcgcaggcgttgtggaattcgacataggcaacactgtggaattcaacaacatagacactgtggattcattacttgtct |
25031695 |
T |
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| Q |
233 |
ttctctctg |
241 |
Q |
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||||||||| |
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| T |
25031694 |
ttctctctg |
25031686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25031946 - 25031904
Alignment:
| Q |
1 |
tcatctcttgttctctctctgtttttaacacgtatatatatat |
43 |
Q |
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| T |
25031946 |
tcatctcttgttctctctctgtttttaacacgtatatatatat |
25031904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 24488940 - 24489020
Alignment:
| Q |
74 |
actgcagtcttgttggtgcaattcatataatgtttcaaccttcttcaattcatcttccatcattgaagatgttgaaactcg |
154 |
Q |
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| T |
24488940 |
actgcagtcttgttggttcagtccatatcaactttcaacattcttcaatttattttccatcattgaagaggttgaaactcg |
24489020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 20506480 - 20506524
Alignment:
| Q |
106 |
tttcaaccttcttcaattcatcttccatcattgaagatgttgaaa |
150 |
Q |
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| T |
20506480 |
tttcaaccttctgcgattcattttccatcattaaagatgttgaaa |
20506524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 17772126 - 17772271
Alignment:
| Q |
36 |
atatatatggaatgttatgtaacatgtgttttgaaaaaactgcagtcttgttggtgcaattcatataatgtttcaaccttcttcaattcatcttccatca |
135 |
Q |
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||||| || |||||||||||||| | | ||||||||| | | ||||||| | ||| |||| ||| | ||| |||||| ||||||| ||||| ||||||| |
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| T |
17772126 |
atatacatagaatgttatgtaacctatcttttgaaaatattacagtcttatcggttcaatccatgtgatgattcaacattcttcagttcattttccatcg |
17772225 |
T |
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| Q |
136 |
ttgaagatgttgaaactcggcgtaggcattgtggaattcgacatag |
181 |
Q |
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| T |
17772226 |
ctcaagatgttgaaaatcgacccaggcatcgtggaacttgacatag |
17772271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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