View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_39 (Length: 250)
Name: NF10818_low_39
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_39 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 35808477 - 35808719
Alignment:
| Q |
8 |
tgagatgaagaactgtgacttaaattatcactgaagtcactgcaagtgaaaaactcaggaaaaggtggcaaactaacatttgaattcatcatatcattgg |
107 |
Q |
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| T |
35808477 |
tgagacgaagaactgtgacttaaattatcactgaagtcactgcaagtgaaaaactcaggaaaaggtggcaaactaacatttgaattcatcatatcattgg |
35808576 |
T |
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| Q |
108 |
aaaaagaagaagtaggagtagcagcagccgcagcgcaacgagccagacgatcctttgcaatggcaagatcatgttgaagttcaaccatcttcctttgcaa |
207 |
Q |
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| T |
35808577 |
aaaaagaagaagtaggagtagcagcagccgcagcgcaacgagccaggcgatcctttgcaatggcaagatcatgttgaagttcaaccatcttcctttgcaa |
35808676 |
T |
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| Q |
208 |
aagtgctatagcacctatgcatccatagacagggtctctaagc |
250 |
Q |
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| T |
35808677 |
aagtgctatagcacctatgcatccatagacagggtctctaagc |
35808719 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 32036245 - 32036352
Alignment:
| Q |
143 |
caacgagccagacgatcctttgcaatggcaagatcatgttgaagttcaaccatcttcctttgcaaaagtgctatagcacctatgcatccatagacagggt |
242 |
Q |
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|||||||| ||||| ||||| |||||||| | |||||| |||||||| | ||||||||||||||| | ||||| | ||| |||||||| || || |||| |
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| T |
32036245 |
caacgagcaagacgttccttagcaatggccaaatcatgctgaagttccatcatcttcctttgcaacatagctatggaaccaatgcatccgtaaactgggt |
32036344 |
T |
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| Q |
243 |
ctctaagc |
250 |
Q |
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| T |
32036345 |
ctctaagc |
32036352 |
T |
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