View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_41 (Length: 242)
Name: NF10818_low_41
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33522275 - 33522052
Alignment:
| Q |
1 |
ttttttctccggaaacaaggagtttttcatgggttgatatgcttcttgttcaatcaattgataagtttcctcaacctatagcatataaaacttatcaaga |
100 |
Q |
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| T |
33522275 |
ttttttctccggaaacaaggagtttttcatgggttgatatgcttcttgttcaatcaattgataagtttcctcaacctatagcatataaaacttatcaaga |
33522176 |
T |
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| Q |
101 |
aggattgcaaatggtacaagacttggggattgcgcgacaatttataatgcaaaagctcgctgtcgaaatgctctacatggttgatcagcttcatcttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33522175 |
aggattgcaaatggtacaagacttggggattgcgcgacaatttataatgcaaaagctcgctgtcgaaatgctctacatggttgatcagcttcatcttaat |
33522076 |
T |
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| Q |
201 |
gtatgcttttggtggtgctatttt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
33522075 |
gtatgcttttggtggtgctatttt |
33522052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 55448549 - 55448326
Alignment:
| Q |
1 |
ttttttctccggaaacaaggagtttttcatgggttgatatgcttcttgttcaatcaattgataagtttcctcaacctatagcatataaaacttatcaaga |
100 |
Q |
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| T |
55448549 |
ttttttcgccagaaacaaggaactattcatgggttgatatgcttcttgttaaatcaattcatgagtttcctcaaccaatagcatatgaaacttatcatga |
55448450 |
T |
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| Q |
101 |
aggattgcaaatggtacaagacttggggattgcgcgacaatttataatgcaaaagctcgctgtcgaaatgctctacatggttgatcagcttcatcttaat |
200 |
Q |
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||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||| |
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| T |
55448449 |
aggattgaaaatggtacaagacttgacaattgcacgacaatttataatgcaaaagctcgccgtcgaaatgctctacattattaatcagtttcatcttaat |
55448350 |
T |
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| Q |
201 |
gtatgcttttggtggtgctatttt |
224 |
Q |
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||||| |||||||||||||||||| |
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| T |
55448349 |
gtatgtttttggtggtgctatttt |
55448326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 7045221 - 7045285
Alignment:
| Q |
141 |
tttataatgcaaaagctcgctgtcgaaatgctctacatggttgatcagcttcatcttaatgtatg |
205 |
Q |
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||||||||||||||||| | ||| | ||||| |||| ||||||||| |||||||||||||||| |
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| T |
7045221 |
tttataatgcaaaagctagttgttggcatgctgaacatcgttgatcagtttcatcttaatgtatg |
7045285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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