View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_45 (Length: 239)
Name: NF10818_low_45
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 16790370 - 16790500
Alignment:
| Q |
1 |
tcatctcttgttattctaaatgaattgccatcgaaagtcacgttacagaataagaagagaggaagatggataacttacaagaataagcaaccacaatgat |
100 |
Q |
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| T |
16790370 |
tcatctcttgttattctaaatgaattgcccttgaaagtcacgttacagaataagaagagaggaagatggataacttacaagaataagcaaccacaatgat |
16790469 |
T |
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| Q |
101 |
ttgatcaatgatgcaaaacttatttacatag |
131 |
Q |
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| T |
16790470 |
ttgatcaatgatgcaaaacttatttacatag |
16790500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 16792326 - 16792413
Alignment:
| Q |
44 |
tacagaataagaagagaggaagatggataacttacaagaataagcaaccacaatgatttgatcaatgatgcaaaacttatttacatag |
131 |
Q |
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| T |
16792326 |
tacagaataagaagagaggaagatggataacttacaagaatgagcaaccgccatggtttgatcaatgatgcaaaacttatatacatag |
16792413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 16616688 - 16616753
Alignment:
| Q |
46 |
cagaataagaagagaggaagatggataacttacaagaataagcaaccacaatgatttgatcaatga |
111 |
Q |
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| T |
16616688 |
cagaataacaagagaggaagacggataactttcaggaataaacaaccgcagtggtttgatcaatga |
16616753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 16790560 - 16790592
Alignment:
| Q |
191 |
tttacattttttatcagaagtgaaatgagatac |
223 |
Q |
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| T |
16790560 |
tttacattttttatcagaagtgaaatgagatac |
16790592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 38877219 - 38877283
Alignment:
| Q |
47 |
agaataagaagagaggaagatggataacttacaagaataagcaaccacaatgatttgatcaatga |
111 |
Q |
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||||||| |||||||||||| ||||||||| | |||||||||||||||| | |||||||||||| |
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| T |
38877219 |
agaataacaagagaggaagacggataacttggaggaataagcaaccacaacggtttgatcaatga |
38877283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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