View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_47 (Length: 239)
Name: NF10818_low_47
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 36409818 - 36410001
Alignment:
| Q |
41 |
attgatcagattcatggacaagtttgagtctaaaaattaacttgatctaatgtgaagaccggattcgtcacatacaaaccaatctaaaacgtgatttgta |
140 |
Q |
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| T |
36409818 |
attgatcagattcatggacaagtttgagtctaaaaattaacttgatctaatgtgaagaccggattcgtcacatacaacccaatctaaaacgtcatttgta |
36409917 |
T |
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| Q |
141 |
catccttagttccggtataggaggattcaacaatactaaagtttgagtgttttgccacttattctattcatttacttgaaagat |
224 |
Q |
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| T |
36409918 |
catccttagttccggtataggaggattcaacaatactaaagtttgagtgttttgccacttattctattcatttacttgaaagat |
36410001 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 5586709 - 5586660
Alignment:
| Q |
29 |
aacctcatcgaaattgatcagattcatggacaagtttgagtctaaaaatt |
78 |
Q |
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| T |
5586709 |
aacctcaccgaatttgatcaggatcatggacatgtttgagtctaaaaatt |
5586660 |
T |
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