View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_52 (Length: 231)
Name: NF10818_low_52
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 48883743 - 48883941
Alignment:
| Q |
17 |
tgtgtgattgaaacgccaaaaaccttttgagtttttgcggaaatgtgtagtgtagtgtagtgttacagtactactcgtgttgttcaataataatcagcan |
116 |
Q |
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| T |
48883743 |
tgtgtaattgaaacgccaaaaaccttttgagtttttgcggaaatgtgtagtgtagtgt-----tacagtactactcgtgttgttcaataataatcagcat |
48883837 |
T |
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| Q |
117 |
nnnnnnggtaatattaatactttatagggggtgtatatggtaaagcgttactcctaattacagtctcccaaagttcttcttcccactgccgtttattgct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48883838 |
ttttttggtaatattaatactttatagggggtgtatatggtaaagcgttactcctaattacagtctcccaaagttcttcttcccactgccgtttattgct |
48883937 |
T |
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