View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_53 (Length: 229)
Name: NF10818_low_53
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_53 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 16790150 - 16790378
Alignment:
| Q |
1 |
catagtgaagggtcgcttgttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgataaaaaggtaaatggtttta |
100 |
Q |
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| T |
16790150 |
catagtgaaggatcaattgttaaaatcatgtacaatgcagtgactatcgatcagaaccttgtatctcacttcacttatgataaaaaggtaaatggtttta |
16790249 |
T |
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| Q |
101 |
tattctattttcaactatttgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgctta |
200 |
Q |
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| T |
16790250 |
tattctattttcaactatttgcattgaatattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaaccgttgcggttgctta |
16790349 |
T |
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| Q |
201 |
ttcctgcaagttatatctcttcatctctt |
229 |
Q |
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| T |
16790350 |
ttcctgcaagttatatctcttcatctctt |
16790378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 16791559 - 16791783
Alignment:
| Q |
4 |
agtgaagggtcgcttgttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgataaaaaggtaaatggttttatat |
103 |
Q |
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| T |
16791559 |
agtgaagggtcacgtattaaaatcatgtacaatgcagtgactatcaatcagaaccatgtatctcacttcacttatgataaaaaggtaagtgattttatat |
16791658 |
T |
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| Q |
104 |
tctattttcaactatttgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattc |
203 |
Q |
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| T |
16791659 |
tctattttcaactatttgcattgattattttgattttcatctcattgattat-tatattgattctgtagtcattgatcaaaccgttgaggttgcttattc |
16791757 |
T |
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| Q |
204 |
ctgcaagttatatctcttcatctctt |
229 |
Q |
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| T |
16791758 |
ctgcaagttatatctcttcttctctt |
16791783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 16616910 - 16616712
Alignment:
| Q |
16 |
cttgttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgataaaaaggtaaatggttttatattctattttcaac |
115 |
Q |
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| T |
16616910 |
cttgtgaaaattatgtacaatgcagtgtctatcaatcaaaaccttgtatctcactttacttctgataaaaaggtaaatgattttatattctgttttgaat |
16616811 |
T |
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| Q |
116 |
tatttgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagttat |
214 |
Q |
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| T |
16616810 |
tatttgcattgaccattttgattttcatctcatcgactatgtatattggttttgtagtcattgatcaaaccactgcggttgtttattcctgaaagttat |
16616712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 16628610 - 16628412
Alignment:
| Q |
16 |
cttgttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgataaaaaggtaaatggttttatattctattttcaac |
115 |
Q |
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||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||| ||| || |
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| T |
16628610 |
cttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaaatgtttttatattctgtttggaat |
16628511 |
T |
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| Q |
116 |
tatttgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagttat |
214 |
Q |
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| T |
16628510 |
tatttgcgttgatcattttgatttttatctcattgactatgaatattacatctgcagtcattgatcaatccgctgcggttacttattcctgcaagttat |
16628412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 16637491 - 16637293
Alignment:
| Q |
16 |
cttgttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgataaaaaggtaaatggttttatattctattttcaac |
115 |
Q |
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||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||| ||| || |
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| T |
16637491 |
cttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaaatgtttttatattctgtttggaat |
16637392 |
T |
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| Q |
116 |
tatttgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagttat |
214 |
Q |
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| T |
16637391 |
tatttgcgttgatcattttgatttttatctcattgactatgaatattacatctgcagtcattgatcaatccgctgcggttacttattcctgcaagttat |
16637293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 16792549 - 16792352
Alignment:
| Q |
16 |
cttgttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgataaaaaggtaaatggttttatattctattttcaac |
115 |
Q |
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||||||||||||||||||| |||| ||||||||||||| | | |||||||||||||| || ||||||||| ||||||| ||||||||| | ||||||| |
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| T |
16792549 |
cttgttaaaatcatgtacattgcaatgactatcaatcaaagccatgtatctcacttcatttctgataaaaatgtaaatgattttatattatgttttcaat |
16792450 |
T |
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| Q |
116 |
tatttgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagttat |
214 |
Q |
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| T |
16792449 |
tattcacattgattattttgattttcatttcattgactatgtatataagttttgca-tcattgatcaaaccatggcggttgctcattcttgtaagttat |
16792352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 16790637 - 16790439
Alignment:
| Q |
16 |
cttgttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgat-aaaaaggtaaatggttttatattctattttcaa |
114 |
Q |
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| T |
16790637 |
cttgttaaaatcatgtacaatgcaatgactatcaatcaaagccatgtatctcatttcacttctgataaaaaatgtaaatgattttatattatcttttgaa |
16790538 |
T |
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| Q |
115 |
ctatttgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagttat |
214 |
Q |
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| T |
16790537 |
ctattcacattgattattttgattttgatttcattgactatgtaaataagttttgca-tcattgatcaaatcattgtggttgcttattcttgtaagttat |
16790439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 38877436 - 38877242
Alignment:
| Q |
20 |
ttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgataaaaaggtaaatggttttatattctattttcaactatt |
119 |
Q |
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| T |
38877436 |
ttaaaatcatgtacaatgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatggttttatattctgttttgaactatt |
38877337 |
T |
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| Q |
120 |
tgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagttat |
214 |
Q |
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|||| |||||||||||||| ||||||| | ||||||||||| ||||| |||||||||||||||| |||| |||||||||||||| |||||||| |
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| T |
38877336 |
cacattaattattttgatttttatctcataggctatgtatatttgttcttcagtcattgatcaaaccgttgtggttgcttattcctccaagttat |
38877242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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