View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10818_low_55 (Length: 227)
Name: NF10818_low_55
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_55 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 21639136 - 21638915
Alignment:
| Q |
4 |
agacgtaacctagaaaagtttcatttcaaagattgtgagtgaactcggaaaggtgtgtcgtcccttgtttaacatgatggttgagttgaaagacccccca |
103 |
Q |
| |
|
|||||||||| |||||| || ||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| ||| |
|
|
| T |
21639136 |
agacgtaacc-agaaaacttgcattttaaagattgtgagtgaactcggaaaggtgtgtcgtcccatgtttgacatgatggtcgagttgaaagaccctcca |
21639038 |
T |
|
| Q |
104 |
aaaccactaggttgctaagaagttgtataaagctatatctctctatatcattgcaaaaccatgtcataactgaatcattgttctaagctatacttttatt |
203 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
21639037 |
aaaccactaggttgctaaaatgttgtataaagctatatctctccatatcgttgcaaaactatgtcataaccgaatcattgttataaactatacttttatt |
21638938 |
T |
|
| Q |
204 |
cttgagattttccacgtgattta |
226 |
Q |
| |
|
|||||||||||| | |||||||| |
|
|
| T |
21638937 |
cttgagattttctaagtgattta |
21638915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 211
Target Start/End: Complemental strand, 2871334 - 2871159
Alignment:
| Q |
35 |
attgtgagtgaactcggaaaggtgtgtcgtcccttgtttaacatgatggttgagttgaaagaccccccaaaaccactaggttgctaagaagttgtataaa |
134 |
Q |
| |
|
|||||||||| || | |||||| |||||||| |||||| ||||||||| ||||| ||||||| || | ||||||||| | ||||| |||||| | |
|
|
| T |
2871334 |
attgtgagtgtaccccgaaagggcagtcgtcccatgtttatcatgatggtagagtttaaagaccttt-aagatcactaggtttccaagaaactgtataga |
2871236 |
T |
|
| Q |
135 |
gctatatctctctatatcattgcaaaaccatgtcataactgaatcattgttctaagctatacttttattcttgagat |
211 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
2871235 |
tctatatcaaactatatcattgtaaaaccatctcataattgattcattgttctaaactacacttttattcttgagat |
2871159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 205
Target Start/End: Original strand, 42526313 - 42526458
Alignment:
| Q |
59 |
tgtcgtcccttgtttaacatgatggttgagttgaaagaccccccaaaaccactaggttgctaagaagttgtataaagctatatctctctatatcattgca |
158 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| ||| ||||| || | || | ||| | || ||| | |||||| ||||||||||||||||| ||||| |
|
|
| T |
42526313 |
tgtcatcccatgtttaacatgatggttgagttaaaatacccct-aaggcgaccatgttaccaaaaagctatataaaactatatctctctatatcgttgca |
42526411 |
T |
|
| Q |
159 |
aaaccatgtcataactgaatcattgttctaagctatacttttattct |
205 |
Q |
| |
|
||||||||| |||||||| || || |||||| | | ||||||||||| |
|
|
| T |
42526412 |
aaaccatgttataactgattctttattctaaaccacacttttattct |
42526458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 2815118 - 2815185
Alignment:
| Q |
143 |
tctctatatcattgcaaaaccatgtcataactgaatcattgttctaagctatacttttattcttgagat |
211 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| || |||| ||| | | ||||||||||||||||| |
|
|
| T |
2815118 |
tctctatatctttgcaaaaccatgccataactgattc-ttgtcttaaaccaaacttttattcttgagat |
2815185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 7394097 - 7394021
Alignment:
| Q |
123 |
aagttgtataaagctatatctctctatatcattgcaaaaccatgtcataactgaatcattgttctaagctatacttt |
199 |
Q |
| |
|
||||||||||||| | | | ||||||||| ||||||| ||||||||||||||| ||||| ||| ||| ||||||| |
|
|
| T |
7394097 |
aagttgtataaagttgcaacactctatatctttgcaaacccatgtcataactgattcatttttcatagccatacttt |
7394021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 13192447 - 13192487
Alignment:
| Q |
51 |
gaaaggtgtgtcgtcccttgtttaacatgatggttgagttg |
91 |
Q |
| |
|
|||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
13192447 |
gaaaggtgtgtcgttccatgtttaacaagatggttgagttg |
13192487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University