View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_57 (Length: 227)
Name: NF10818_low_57
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_57 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 44256357 - 44256535
Alignment:
| Q |
45 |
attataattataatgaactaataaggtctaattgtagcatagtttctggattataatcaatgttcctttcactgtaagcaaacctgaatatatataggct |
144 |
Q |
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| T |
44256357 |
attataattataatgaactaataaggtctaattgtagcttagtttctggattataatcaatgttcctttcaatgtatgtaaacctgaatat----aggct |
44256452 |
T |
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| Q |
145 |
atgaaacatgaactctaacacgacgagtgtcatacttaaagaaaagcatacataccacccataatttcttaagatcaaaatca |
227 |
Q |
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| T |
44256453 |
atgaaacatgaactctaacacgacgagtgtcatacttaaagaaaagcatacataccacccataatttcttaagatcaaaatca |
44256535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 44256286 - 44256329
Alignment:
| Q |
4 |
tcaaaacacacgagtggttttttagacaacctataacaatcatt |
47 |
Q |
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| T |
44256286 |
tcaaaacacacgagtggttttttagacaacctataagaatcatt |
44256329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 20473076 - 20473113
Alignment:
| Q |
190 |
gcatacataccacccataatttcttaagatcaaaatca |
227 |
Q |
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| T |
20473076 |
gcatacataccacccataatttcttaagatcaaaatca |
20473113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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