View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_59 (Length: 215)
Name: NF10818_low_59
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 47349786 - 47349604
Alignment:
| Q |
16 |
agatgagaaggggtctatgaacagaccaactcaaaccctctttctttttggtttcttcaaacaagatatcttcctgagtgtaatagaaatttggtatatc |
115 |
Q |
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| T |
47349786 |
agatgagaaggggtctatgaacagaccaactcaaaccctctttctttttggtttcttcaaacaagatatcttcctgagtgtaatagaaatttggtatatc |
47349687 |
T |
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| Q |
116 |
caaacgcggtagatcctccgtaaagggcggctcgtggctattaatcttgtcgatcaacgcgaagggtcctaaatagtgtttcc |
198 |
Q |
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| T |
47349686 |
caaacgcggtagatcctccgtaaaggacggctcgtggctattaatcttgtcgatcaacgcgaagggtcctaaatagtgtttcc |
47349604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 47347236 - 47347067
Alignment:
| Q |
27 |
ggtctatgaacagaccaactcaaaccctctttctttttggtttcttcaaacaagatatcttcctgagtgtaatagaaatttggtatatccaaacgcggta |
126 |
Q |
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| T |
47347236 |
ggtctatgaacagaccaactcaaaccctctttcttttgagtttcttcaaacaaaatatcttcctgagtgtaatagaaatttggcgcatctaaacgcggta |
47347137 |
T |
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| Q |
127 |
gatcctccgtaaagggcggctcgtggctattaatcttgtcgatcaacgcgaagggtcctaaatagtgttt |
196 |
Q |
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| T |
47347136 |
aatcctccgtgaacggcggctcatgactattaatcttcccgatcagatcaaacggtcctaaatagtgttt |
47347067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 3819100 - 3819190
Alignment:
| Q |
16 |
agatgagaaggggtctatgaacagaccaactcaaaccctctttctttttggtttcttcaaacaagatatcttcctgagtgtaatagaaatt |
106 |
Q |
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| T |
3819100 |
agatgagaagtggcctatgaacagaccaactcacaccttctttcttacctgtttcttcaaacaaaacatcttcaagtgtataatagaaatt |
3819190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 47338777 - 47338687
Alignment:
| Q |
16 |
agatgagaaggggtctatgaacagaccaactcaaaccctctttctttttggtttcttcaaacaagatatcttcctgagtgtaatagaaatt |
106 |
Q |
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| T |
47338777 |
agatgagaagtggcctatgaacagaccaactcacgccttctttcttccctgtttcttcaaacaaaacatcttcaagtgtataatagaaatt |
47338687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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