View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10818_low_60 (Length: 214)
Name: NF10818_low_60
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_60 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 26583295 - 26583493
Alignment:
| Q |
18 |
ctcaccaagttcatcaggcagcaatcctaatagcaataagaaaa--ttattcactacgaaagtacaattacagtacagtcacttccataaagaacagaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26583295 |
ctcaccaagttcatcaggcagcaatcctaatagcaataagaaaaaattattcactacgaaagtacaattacagtacagtcacttccataaagaacagaag |
26583394 |
T |
|
| Q |
116 |
ttacatagcaattaccatgtatggctaactcattcttgttcaaattagcccgagaaggccatttctcccttttttcaattgaaatccagcggcgggtct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26583395 |
ttacatagcaattaccatgtatggctaactcattcttgttcaaattagcccgagaaggccatttctcccttttttcaattgaaagccagcggcgggtct |
26583493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University