View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_62 (Length: 212)
Name: NF10818_low_62
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 5235557 - 5235731
Alignment:
| Q |
17 |
aatatcttgaatttgattagattactgagcttcgaaattttgtaggttggggagctgatgaaaaagccattatagcaatattaggtcatagaaatggtac |
116 |
Q |
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| T |
5235557 |
aatatcttgaatttgattaaattactgagcttcgaaattttgtaggttggggagctgatgaaaaagccattatagcaatattaggtcatagaaatggtac |
5235656 |
T |
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| Q |
117 |
ccaaaggactcaaataagacaagcatactatgaactctatcaagaggatctcatcaaacgccttgagtctgagct |
191 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
5235657 |
ccaaaggactcaaatcagacaagcatactatgaactctatcaagaggatctcatcaaacgccttgaatttgagct |
5235731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 5184179 - 5184358
Alignment:
| Q |
17 |
aatatcttgaatttgattagattactgagcttcgaaattttgtaggttggggagctgatgaaaaagccattatagcaatattaggtcatagaaatggtac |
116 |
Q |
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||||||||||| ||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5184179 |
aatatcttgaaattgattaaattactgggctacaaaattttgtaggttggggagctgatgaaaaagccattatagcaatattaggtcatagaaatggtac |
5184278 |
T |
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| Q |
117 |
ccaaaggactcaaataagacaagcatactatgaactctatcaagaggatctcatcaaacgccttgagtctgagctctctg |
196 |
Q |
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| T |
5184279 |
ccaaaggactcaaatcagacaagcatactatgaactctatcaagaggatctcatcaaacgccttgagtctgagctttctg |
5184358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 14153117 - 14153075
Alignment:
| Q |
154 |
tatcaagaggatctcatcaaacgccttgagtctgagctctctg |
196 |
Q |
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| T |
14153117 |
tatcaagaggatctcatcaaacgccttgaatctgaactctctg |
14153075 |
T |
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