View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_8 (Length: 394)
Name: NF10818_low_8
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 15 - 384
Target Start/End: Complemental strand, 37728224 - 37727855
Alignment:
| Q |
15 |
acaaacaactaaaattctaaaagggaaaagctacatgtggtcacactgagtatgcctctgacataacaaaagttgactagatatttgatcatcttctcaa |
114 |
Q |
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| T |
37728224 |
acaaacaactaaaattctaaaagggaaaagctacatgtggtcacactgagtatgcctctgacataacaaaagttgactagatatttgatcatcttctcaa |
37728125 |
T |
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| Q |
115 |
agataaatagattaagctattagatggtcacaagatccttccatccgattccgaggagatcatgaaagccaaaatggtattgtaaatgacacaatcccta |
214 |
Q |
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| T |
37728124 |
agataaatagattaagctattagatggtcacaagatccttccatccgattccgaggagatcatgaaagccaaaatggtattgtaaatgacacaatcccaa |
37728025 |
T |
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| Q |
215 |
taatcgttcaatgtctgatgcattatctatcttcccaaaggccatccaaaagattaagcattatgtatatccatatatatgacaagtgttgtatgaagta |
314 |
Q |
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| T |
37728024 |
taatcgttcaatgtctgatgcattatctatcttcccaaaggccatccaaaagattaagcattatgtatatccatatatatgacaagtgttgtatgaagta |
37727925 |
T |
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| Q |
315 |
ggaagttaagcattgcataatcgattttctttcttttgggttgggggttcatgtgcatcatatgcctttg |
384 |
Q |
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| T |
37727924 |
ggaagttaagcattgcataatcgattttctttcttttgggttgggggttcatgtgcatcatatgcctttg |
37727855 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 17910693 - 17910774
Alignment:
| Q |
65 |
tatgcctctgacataacaaaagttgactagatatttgatcatcttctcaaagataaatagattaagctattagatggtcaca |
146 |
Q |
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| T |
17910693 |
tatgcctttgatgtaacaaaagctggccagatatttgatcatctgctcaaagataagaagattaagttgttagatggtcaca |
17910774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 23286717 - 23286804
Alignment:
| Q |
58 |
cactgagtatgcctctgacataacaaaagttgactagatatttgatcatcttctcaaagataaatagattaagctattagatggtcac |
145 |
Q |
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| T |
23286717 |
cactgagtatgcctttgacacaacgaaagttggccaaatatttgatcatatgctcaaagataagcatatttggctattagatgctcac |
23286804 |
T |
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