View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_9 (Length: 388)
Name: NF10818_low_9
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 372
Target Start/End: Original strand, 30497898 - 30498259
Alignment:
| Q |
11 |
cagagaaaccaagaaagtgatgttagagcagaacacatttttcttttccttcnnnnnnncactgcaacttatcttttcactactccaaatgagaaattta |
110 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30497898 |
cagagaaaccaagaaagtgatgttagagcataacacatttttcttttccttcaaaaaaacactgcagcttatcttttcactactccaaatgagaaattta |
30497997 |
T |
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| Q |
111 |
atgtgtaatctgagccattagattaaaagaaaatagtggacaaagatgtggagtaagtctttaaacttattatttgagtcaatatatctcttctaaaaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30497998 |
atgtgtaatctgagccattagattaaaagaaaatagtggacaaagatgtggagtaagtctttaaacttattatttgagtcaatatatctcttctaaaaat |
30498097 |
T |
|
| Q |
211 |
aatattgtaacaaagattcctggttattgcatagtgatgaggatactgatcacgatagctagtttactcatttccttgttgtacaagtaacagatactag |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30498098 |
aatattgtaacaaagattcctggttattgcatagtgatgaggatactaatcacaatagctagtttactcatttccttgttgtacaagtaacagatactag |
30498197 |
T |
|
| Q |
311 |
ggttctatacgctactgcatgcatagtttaggttatcatgcactgagatccttgtatatata |
372 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30498198 |
ggttctatacgctactgcatgcatagtttaggttatcatgcactgagatccttgtatatata |
30498259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 30505819 - 30506023
Alignment:
| Q |
27 |
gtgatgttagagcagaacacatttttcttttccttcnnnnnnncactgcaacttatcttttcactactccaaatgagaaatttaatgtgtaatctgagcc |
126 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| | |||||||||||||||||||| || |
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| T |
30505819 |
gtgatgttagagcataacacatttttcttttccttcgaaaaaacactggaacttatcttttcgctactccaaattaaaaatttaatgtgtaatctgaacc |
30505918 |
T |
|
| Q |
127 |
attagattaaaagaaaatagtggacaaagatgtggagtaagtctttaaacttattatttgagtcaatatatctcttctaaaaataatattgtaacaaaga |
226 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30505919 |
gttagattaaaagaaaatagtggacgaagatgtggtgtaagtctttaaacttataatttgagtcaatatatatcttctaaaaataatattgtaacaaaga |
30506018 |
T |
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| Q |
227 |
ttcct |
231 |
Q |
| |
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||||| |
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| T |
30506019 |
ttcct |
30506023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 265 - 372
Target Start/End: Original strand, 27982850 - 27982957
Alignment:
| Q |
265 |
atagctagtttactcatttccttgttgtacaagtaacagatactagggttctatacgctactgcatgcatagtttaggttatcatgcactgagatccttg |
364 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||| ||||||||| ||||| ||||||| |||| |
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| T |
27982850 |
atagttagtttactcatttccttgttgtacaagtaacagatactagggttttatattttactgaatgtatattttaggttaccatgccctgagattcttg |
27982949 |
T |
|
| Q |
365 |
tatatata |
372 |
Q |
| |
|
|||||||| |
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|
| T |
27982950 |
tatatata |
27982957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 42995338 - 42995380
Alignment:
| Q |
155 |
gatgtggagtaagtctttaaacttattatttgagtcaatatat |
197 |
Q |
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|||||||||||| |||||||||||| |||| |||||||||||| |
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| T |
42995338 |
gatgtggagtaactctttaaacttactattggagtcaatatat |
42995380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 21435448 - 21435406
Alignment:
| Q |
155 |
gatgtggagtaagtctttaaacttattatttgagtcaatatat |
197 |
Q |
| |
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|||||||||||| |||||||||||||| || |||||||||||| |
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| T |
21435448 |
gatgtggagtaactctttaaacttattcttagagtcaatatat |
21435406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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