View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10819_low_1 (Length: 590)

Name: NF10819_low_1
Description: NF10819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10819_low_1
NF10819_low_1
[»] chr3 (4 HSPs)
chr3 (9-407)||(44112526-44112925)
chr3 (415-450)||(44112944-44112979)
chr3 (542-573)||(44113085-44113116)
chr3 (319-363)||(40555290-40555334)
[»] chr1 (1 HSPs)
chr1 (426-469)||(51666834-51666877)
[»] chr5 (1 HSPs)
chr5 (424-469)||(3770978-3771023)
[»] chr7 (1 HSPs)
chr7 (424-461)||(36186856-36186893)
[»] chr8 (1 HSPs)
chr8 (424-464)||(33863225-33863265)
[»] chr2 (1 HSPs)
chr2 (421-453)||(12208493-12208525)


Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 9 - 407
Target Start/End: Original strand, 44112526 - 44112925
Alignment:
Q  9 gaacctgtggaaggaaataacgcctaaagtgaagtaaaaaatagtaatggcaacattaacaaatagaaatcatcatatcatatgattaat-ataagttgc 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44112526 gaacatgtggaaggaaataacgcctaaagtgaagtaaaaaatagtaatggcaacattaacaaatagaaatcatcatatcatatgattaattataagttgc 44112625  T
Q  108 aagaggaatgccactgaaagaagctttggagcgtagcaacatcagctctgtagtgtttttgtgtaaattcaaacaaacttgaccatgtaaaatcagggta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44112626 aagaggaatgccactgaaagaagctttggagcgtagcaacatcagctctgtagtgtttttgtgtaaattcaaacaaacttgaccatgtaaaatcagggta 44112725  T
Q  208 ctttcttgcctcatttttgcttaacaaattttctgggggtctcaccactttgtcttctcttggacacacaaagaaaaccagtgaccttctttctctgtat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44112726 ctttcttgcctcatttttgcttaacaaattttctgggggtctcaccactttgtcttctcttggacacacaaagaaaaccagtgaccttctttctctgtat 44112825  T
Q  308 ctgttcactaatgccctgtggaggcaactcttgtatcttccatttgataacgcctgaaaatacacaagaaaactaatgagaaatattatttgtacaacta 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  44112826 ctgttcactaatgccctgtggaggcaactcttgtatcttccatttgataacgcctgaaaatatacaagaaaactaatgagaaatgttatttgtacaacta 44112925  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 450
Target Start/End: Original strand, 44112944 - 44112979
Alignment:
Q  415 acaatactttcataatcacattattttcttattctc 450  Q
    |||||||| |||||||||||||||||||||||||||    
T  44112944 acaatactctcataatcacattattttcttattctc 44112979  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 542 - 573
Target Start/End: Original strand, 44113085 - 44113116
Alignment:
Q  542 agtaattatggctacaaaatgtttctattgat 573  Q
    ||||||||||||||||||||||||||||||||    
T  44113085 agtaattatggctacaaaatgtttctattgat 44113116  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 40555334 - 40555290
Alignment:
Q  319 tgccctgtggaggcaactcttgtatcttccatttgataacgcctg 363  Q
    |||||| || |||||||||||||| |||||||||||||| |||||    
T  40555334 tgccctatgtaggcaactcttgtaccttccatttgataatgcctg 40555290  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 469
Target Start/End: Original strand, 51666834 - 51666877
Alignment:
Q  426 ataatcacattattttcttattctctctattgtttttgaacaat 469  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  51666834 ataatcacattatcttcttattctctctattgtttttgaccaat 51666877  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 424 - 469
Target Start/End: Complemental strand, 3771023 - 3770978
Alignment:
Q  424 tcataatcacattattttcttattctctctattgtttttgaacaat 469  Q
    ||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  3771023 tcatactcacattatgttcttattctctctattgtttttgaccaat 3770978  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 461
Target Start/End: Complemental strand, 36186893 - 36186856
Alignment:
Q  424 tcataatcacattattttcttattctctctattgtttt 461  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  36186893 tcatactcacattatattcttattctctctattgtttt 36186856  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 33863265 - 33863225
Alignment:
Q  424 tcataatcacattattttcttattctctctattgtttttga 464  Q
    ||||| ||||||||| ||||||||||||||||| |||||||    
T  33863265 tcatactcacattatattcttattctctctattatttttga 33863225  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 453
Target Start/End: Original strand, 12208493 - 12208525
Alignment:
Q  421 ctttcataatcacattattttcttattctctct 453  Q
    |||||||| ||||||||||||||||||||||||    
T  12208493 ctttcatactcacattattttcttattctctct 12208525  T

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