View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10819_low_11 (Length: 250)

Name: NF10819_low_11
Description: NF10819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10819_low_11
NF10819_low_11
[»] chr8 (5 HSPs)
chr8 (1-237)||(23285589-23285825)
chr8 (13-237)||(23392752-23392976)
chr8 (51-237)||(23341746-23341932)
chr8 (51-237)||(23385202-23385388)
chr8 (81-173)||(21180570-21180662)
[»] chr6 (2 HSPs)
chr6 (87-232)||(3979341-3979486)
chr6 (96-166)||(25810289-25810359)
[»] chr2 (1 HSPs)
chr2 (87-166)||(34328518-34328597)
[»] chr3 (11 HSPs)
chr3 (87-216)||(5849826-5849955)
chr3 (87-166)||(20342780-20342859)
chr3 (96-166)||(5445453-5445523)
chr3 (96-166)||(5454036-5454106)
chr3 (102-175)||(1050102-1050175)
chr3 (96-166)||(5502078-5502148)
chr3 (102-175)||(1077019-1077092)
chr3 (102-175)||(1090825-1090898)
chr3 (102-175)||(1107220-1107293)
chr3 (102-175)||(1299928-1300001)
chr3 (87-216)||(5803399-5803528)
[»] chr1 (1 HSPs)
chr1 (94-139)||(21936036-21936081)
[»] chr4 (1 HSPs)
chr4 (99-153)||(36438139-36438193)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 23285825 - 23285589
Alignment:
Q  1 tttttgttatcctaaattatagtattcagggaacactcgtagacgggaaggaggtagccataaaacggcactcaaaggtgtcagatcaaggattggagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23285825 tttttgttatcctaaattatagtattcagggaacactcgtagacgggaaggaggtagccataaaacgacactcaaaggtgtcagatcaaggattggagga 23285726  T
Q  101 gtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattcatagagaggaaatgttattgatatat 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23285725 gtttaaaaatgaagttgtgttgattgcaaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattcatagagaggaaatgttattgatatat 23285626  T
Q  201 gaatacatgcctaacaagagcttagactacttcatct 237  Q
    ||||||||||| ||||| || ||||||||||||||||    
T  23285625 gaatacatgcccaacaaaagtttagactacttcatct 23285589  T

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Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 23392752 - 23392976
Alignment:
Q  13 taaattatagtattcagggaacactcgtagacgggaaggaggtagccataaaacggcactcaaaggtgtcagatcaaggattggaggagtttaaaaatga 112  Q
    ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23392752 taaattataatatgcagggaagactcgtagacgggaaggaggtagccataaaacggcactcaaaggtgtcagatcaaggattggaggagtttaaaaatga 23392851  T
Q  113 agttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattcatagagaggaaatgttattgatatatgaatacatgcct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  23392852 agttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattcataaagaggaaatgttattgatatatgaatacatgccc 23392951  T
Q  213 aacaagagcttagactacttcatct 237  Q
    ||||| |||||||||||||||||||    
T  23392952 aacaaaagcttagactacttcatct 23392976  T

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Target: chr8; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 23341932 - 23341746
Alignment:
Q  51 gaggtagccataaaacggcactcaaaggtgtcagatcaaggattggaggagtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttg 150  Q
    |||||||||||||||||| |||||||  |||| |||||||| |||||||| ||||||||||||||| |||||||||| || ||||| |||||||||||||    
T  23341932 gaggtagccataaaacggaactcaaaaatgtctgatcaagggttggaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttg 23341833  T
Q  151 tgaagcttcttggttgctgcattcatagagaggaaatgttattgatatatgaatacatgcctaacaagagcttagactacttcatct 237  Q
    |||||||||| ||||| || ||||| ||||||||||  || ||||| |||||||||||||| ||   ||||||||||||||||||||    
T  23341832 tgaagcttctcggttgttgtattcacagagaggaaaaattgttgatctatgaatacatgcccaatcggagcttagactacttcatct 23341746  T

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Target: chr8; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 51 - 237
Target Start/End: Original strand, 23385202 - 23385388
Alignment:
Q  51 gaggtagccataaaacggcactcaaaggtgtcagatcaaggattggaggagtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttg 150  Q
    |||||||||||||||||| |||||||  |||| |||||||| |||||||| ||||||||||||||| |||||||||| || ||||| |||||||||||||    
T  23385202 gaggtagccataaaacggaactcaaaaatgtctgatcaagggttggaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttg 23385301  T
Q  151 tgaagcttcttggttgctgcattcatagagaggaaatgttattgatatatgaatacatgcctaacaagagcttagactacttcatct 237  Q
    |||||||||| ||||| || ||||| ||||||||||  || ||||| |||||||||||||| ||   ||||||||||||||||||||    
T  23385302 tgaagcttctcggttgttgtattcacagagaggaaaaattgttgatctatgaatacatgcccaatcggagcttagactacttcatct 23385388  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 21180662 - 21180570
Alignment:
Q  81 tcagatcaaggattggaggagtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcatt 173  Q
    |||| |||||||| |||||||||   ||||||||   |||||||||||||||| ||||||  ||||||||| |  ||||| || |||||||||    
T  21180662 tcaggtcaaggatgggaggagttgcgaaatgaagcattgttgattgcgaaactccaacacaataatcttgttagacttctcggctgctgcatt 21180570  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 3979486 - 3979341
Alignment:
Q  87 caaggattggaggagtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattcatagagaggaaa 186  Q
    ||||| ||| |||| || ||||||||||  | ||||||||| ||||||||||||||||||||||| || |||||||| ||||||||| |  |||  ||||    
T  3979486 caagggttgcaggaattcaaaaatgaagcggcgttgattgccaaacttcaacaccgtaatcttgtcaaacttcttggatgctgcattgaaggaggagaaa 3979387  T
Q  187 tgttattgatatatgaatacatgcctaacaagagcttagactactt 232  Q
       |  |||| |||||||||||||| ||||| ||||| ||||||||    
T  3979386 caatgctgatctatgaatacatgcccaacaaaagcttggactactt 3979341  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 25810289 - 25810359
Alignment:
Q  96 gaggagtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttg 166  Q
    |||||||| |||||||||||   |||||| || | ||||||||||||||||||||| || |||||||||||    
T  25810289 gaggagttcaaaaatgaagtaaagttgatggcaacacttcaacaccgtaatcttgtaaaacttcttggttg 25810359  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 34328518 - 34328597
Alignment:
Q  87 caaggattggaggagtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttg 166  Q
    ||||||||| | || |||||||| |||||    ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  34328518 caaggattgaatgaatttaaaaacgaagtaaaattgattgcgaaacttcaacaccgaaatcttgtaaagcttcttggttg 34328597  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 216
Target Start/End: Original strand, 5849826 - 5849955
Alignment:
Q  87 caaggattggaggagtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattcatagagaggaaa 186  Q
    |||||| | |||||||| |||||||||||   |||||| || | ||||||||||||||||||||| || ||||||||||| |  |||||   ||| ||||    
T  5849826 caaggagttgaggagttcaaaaatgaagtaaagttgatggcaacacttcaacaccgtaatcttgtaaaacttcttggttgttctattcaacaagatgaaa 5849925  T
Q  187 tgttattgatatatgaatacatgcctaaca 216  Q
     ||| ||||| ||||||| |||||| ||||    
T  5849926 agttgttgatctatgaattcatgcccaaca 5849955  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 20342859 - 20342780
Alignment:
Q  87 caaggattggaggagtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttg 166  Q
    |||||| | |||||||| |||||||||||   |||||| || | ||||||||||||||||||||| || |||||||||||    
T  20342859 caaggaattgaggagttcaaaaatgaagtaaagttgatggcaacacttcaacaccgtaatcttgtaaaacttcttggttg 20342780  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 5445523 - 5445453
Alignment:
Q  96 gaggagtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttg 166  Q
    |||||||| |||||||||||   |||||| || | ||||||||||||||||||||| || |||||||||||    
T  5445523 gaggagttcaaaaatgaagtaaagttgatggcaacacttcaacaccgtaatcttgtaaaacttcttggttg 5445453  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 5454106 - 5454036
Alignment:
Q  96 gaggagtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttg 166  Q
    |||||||| |||||||||||   |||||| || | ||||||||||||||||||||| || |||||||||||    
T  5454106 gaggagttcaaaaatgaagtaaagttgatggcaacacttcaacaccgtaatcttgtaaaacttcttggttg 5454036  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 1050102 - 1050175
Alignment:
Q  102 tttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattca 175  Q
    ||||||||||||||| | ||   ||| |||||||||||||| |||||||| ||| |||||||||| ||||||||    
T  1050102 tttaaaaatgaagttatattatgtgcaaaacttcaacaccgaaatcttgttaaggttcttggttgttgcattca 1050175  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 5502148 - 5502078
Alignment:
Q  96 gaggagtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttg 166  Q
    |||||||| |||||||||||    ||||| || | ||||||||||||||||||||| || |||||||||||    
T  5502148 gaggagttcaaaaatgaagtaaacttgatggcaacacttcaacaccgtaatcttgttaaacttcttggttg 5502078  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 1077019 - 1077092
Alignment:
Q  102 tttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattca 175  Q
    ||||||||||||||| | ||   ||| ||||||||||| || |||||||| ||| |||||||||| ||||||||    
T  1077019 tttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattca 1077092  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 1090825 - 1090898
Alignment:
Q  102 tttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattca 175  Q
    ||||||||||||||| | ||   ||| ||||||||||| || |||||||| ||| |||||||||| ||||||||    
T  1090825 tttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattca 1090898  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 1107220 - 1107293
Alignment:
Q  102 tttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattca 175  Q
    ||||||||||||||| | ||   | |||||||||||||||| |||||||| ||| |||||||||| || |||||    
T  1107220 tttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattca 1107293  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 1300001 - 1299928
Alignment:
Q  102 tttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattca 175  Q
    ||||||||||||||| | ||   ||| ||||||||||| || |||||||| ||| |||||||||| ||||||||    
T  1300001 tttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattca 1299928  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 216
Target Start/End: Original strand, 5803399 - 5803528
Alignment:
Q  87 caaggattggaggagtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattcatagagaggaaa 186  Q
    |||||||  |||||||| |||||||||||   |||||| || | |||||||||||||||||| || || |||||||| || |  |||||   ||| ||||    
T  5803399 caaggatccgaggagttcaaaaatgaagtaaagttgatggcaacacttcaacaccgtaatctagtaaaacttcttggctgttctattcaacaagatgaaa 5803498  T
Q  187 tgttattgatatatgaatacatgcctaaca 216  Q
     ||| ||||| ||||||| |||||| ||||    
T  5803499 agttgttgatctatgaattcatgcccaaca 5803528  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 21936036 - 21936081
Alignment:
Q  94 tggaggagtttaaaaatgaagttgtgttgattgcgaaacttcaaca 139  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||||||    
T  21936036 tggaggagtttaagaatgaagttgttttgatcgcgaaacttcaaca 21936081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 36438193 - 36438139
Alignment:
Q  99 gagtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtga 153  Q
    |||||||||||||| ||||| |||||| | |||||||||||| | ||||||||||    
T  36438193 gagtttaaaaatgaggttgttttgatttcaaaacttcaacacagaaatcttgtga 36438139  T

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