View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10819_low_12 (Length: 249)
Name: NF10819_low_12
Description: NF10819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10819_low_12 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 35775133 - 35774888
Alignment:
| Q |
4 |
agaagcaaagggaaacaaaaaacaattatccatcctcagttaagatagacatgccaagcagctacatatccacaacacacatgattaccatcataggcag |
103 |
Q |
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| T |
35775133 |
agaagccaagggaaacaaaaaacaattatccatcctcagttaagatagacatgccaagcaactacatatccacaacacacatgattaccatcataggcag |
35775034 |
T |
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| Q |
104 |
aaaacatcaagtccattttaaaccgcaaagatatcaaaagttctgaatacaagcagacctgatatgcttccatggaatgatcagcagcctcttttcgttc |
203 |
Q |
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| T |
35775033 |
aaaacattaagtccattttaaaccgcaaagatatcaaaagttctgaatacaagcagacctgatatgcttccatggaatgatcagcagcctcttttcgttc |
35774934 |
T |
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| Q |
204 |
atcaccgttcttaaattccgccaaataccgataataatcccctttc |
249 |
Q |
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| T |
35774933 |
atcaccgttcttaaattccgccaaataccgataataatcccctttc |
35774888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 4802789 - 4802700
Alignment:
| Q |
160 |
acctgatatgcttccatggaatgatcagcagcctcttttcgttcatcaccgttcttaaattccgccaaataccgataataatcccctttc |
249 |
Q |
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||||||||||||| || ||| ||||||||||||||||| | |||||||| ||||||| || |||| ||| ||||||||||| |||||| |
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| T |
4802789 |
acctgatatgctttcaaggactgatcagcagcctctttcctctcatcaccactcttaaactcagccagataacgataataatcgcctttc |
4802700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 32200137 - 32200105
Alignment:
| Q |
217 |
aattccgccaaataccgataataatcccctttc |
249 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
32200137 |
aattccgccaaataccgataataatcacctttc |
32200105 |
T |
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