View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10819_low_13 (Length: 249)

Name: NF10819_low_13
Description: NF10819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10819_low_13
NF10819_low_13
[»] chr5 (5 HSPs)
chr5 (16-229)||(15262992-15263205)
chr5 (127-224)||(15287332-15287429)
chr5 (132-224)||(15284486-15284578)
chr5 (127-213)||(15256661-15256747)
chr5 (127-214)||(15265186-15265273)
[»] chr3 (1 HSPs)
chr3 (132-223)||(51383672-51383763)
[»] chr8 (1 HSPs)
chr8 (133-224)||(44247983-44248074)
[»] chr7 (2 HSPs)
chr7 (132-223)||(11806900-11806991)
chr7 (157-209)||(48391667-48391719)
[»] chr6 (2 HSPs)
chr6 (161-206)||(6554179-6554224)
chr6 (156-206)||(6543659-6543709)
[»] chr2 (1 HSPs)
chr2 (148-206)||(4835980-4836038)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 15263205 - 15262992
Alignment:
Q  16 cagagaatgaacataataaacataatctttctatggaaatatttgattaataaattaacaagctaagaggaatgaatgtctcactcttcactccttggtt 115  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15263205 cagagaatgaacataataaacataatctttctatggaaagattagattaataaattaacaagctaagaggaatgaatgtctcactcttcactccttggtt 15263106  T
Q  116 gtcccttccaatcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacata 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15263105 gtcccttccaatcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtccaggcaaacaccaatgaacacaatcattttgcacata 15263006  T
Q  216 ctttggaacaccgt 229  Q
    ||||||||||||||    
T  15263005 ctttggaacaccgt 15262992  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 15287332 - 15287429
Alignment:
Q  127 tcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaac 224  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  15287332 tcccacctcttcatcatctctacaaaaatctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacatattttggaac 15287429  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 15284578 - 15284486
Alignment:
Q  132 cttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaac 224  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  15284578 cttcttcatcatctccaacaaaatctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacatattttggaac 15284486  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 15256661 - 15256747
Alignment:
Q  127 tcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcaca 213  Q
    ||||| |||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||    
T  15256661 tcccatttcttcataatctccagaaaaatctcattccatgtgtctataggtccaggcaaacaccaatgaacacaatcattctgcaca 15256747  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 15265186 - 15265273
Alignment:
Q  127 tcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacat 214  Q
    ||||| ||||| || || |||| ||| ||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||    
T  15265186 tcccatttctttataatttctaaaaatatctcattccatgtatcaattggtccaggcaaacaccaatgaacacaatcattttgcacat 15265273  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 51383763 - 51383672
Alignment:
Q  132 cttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaa 223  Q
    ||||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51383763 cttcttcatgatctccaaaaaaatctcattccaagtgtctataggtcctggcaaacaccaatgaacacaatcattttgtacatactttggaa 51383672  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 44247983 - 44248074
Alignment:
Q  133 ttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaac 224  Q
    |||||||||||||  | |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  44247983 ttcttcatcatctgcaaaaaaatctcattccaaatatctataggtcctggcaagcaccaatgaacacaatcattttgtacattctttggaac 44248074  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 11806900 - 11806991
Alignment:
Q  132 cttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaa 223  Q
    ||||||||||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||  |||||| ||||| |||| ||||||||    
T  11806900 cttcttcatcatctccaaaaaaatctcattccaagtatcaataggtcctggcaagcaccaatgagtacaatcgttttgtacattctttggaa 11806991  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 48391719 - 48391667
Alignment:
Q  157 tcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttg 209  Q
    |||||||||| ||| || |||||||||||| ||||||| | ||||||||||||    
T  48391719 tcattccaagaatcgattggtcctggcaaataccaatgtaaacaatcattttg 48391667  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 6554179 - 6554224
Alignment:
Q  161 tccaagtatctataggtcctggcaaacaccaatgaacacaatcatt 206  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||    
T  6554179 tccatgtatctataggccctggcaaacaccaatgaacacaatcatt 6554224  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 6543659 - 6543709
Alignment:
Q  156 ctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcatt 206  Q
    ||||||||| ||||| | |||||| || |||||||||||||||||||||||    
T  6543659 ctcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcatt 6543709  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 4835980 - 4836038
Alignment:
Q  148 agaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcatt 206  Q
    ||||||||||||||   |||||| | ||| ||||||| |||||||||||||||||||||    
T  4835980 agaaaaatctcattaatagtatcaacaggccctggcatacaccaatgaacacaatcatt 4836038  T

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