View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10819_low_14 (Length: 246)
Name: NF10819_low_14
Description: NF10819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10819_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11852247 - 11852494
Alignment:
| Q |
1 |
aatcttggaaaccaaacaccactttcatttgtttgctccggttgtcataattcttcccattgagaattggaaggttttgcaggaaagtttccatctgtat |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11852247 |
aatcttggaaaccaaacaccacattcatttgtttgctccggttgtcataattcttcccattgagaattggaaggttttgcaggaaagtttccatctgtat |
11852346 |
T |
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| Q |
101 |
gtgtcgtgccattgacgactcttttcacttagaactaagctcttgatgccagatgtttgaaattgaactgcttacttagttcacacacacacgca----- |
195 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11852347 |
gtgtcgtgccattgacgactcttttcacttagaactaggctcttgatgccagatgtttgaaattgaactgcttacttagttcacacacacacgcacacat |
11852446 |
T |
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| Q |
196 |
-------ttcacgcgcacgtacgcatatgcgcccatacacatcttctt |
236 |
Q |
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||| |||||||| | |||||||||||||||||||||||||| |
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| T |
11852447 |
acacgcattcgcgcgcacgcatgcatatgcgcccatacacatcttctt |
11852494 |
T |
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