View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10819_low_16 (Length: 242)
Name: NF10819_low_16
Description: NF10819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10819_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 32055233 - 32055011
Alignment:
| Q |
20 |
aagccaatgcttgctcttgaaactttgtacctaggaatcccagatgaatctgttaacctcacttttcaagaccttgctgatgtgaacacatcagaaaata |
119 |
Q |
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| T |
32055233 |
aagccaatgcttgctcttgaaactttgtacctaggaatcccagatgaatctgttaacctcacttttcaagaccttgctgatgtgaacacatcagaaaata |
32055134 |
T |
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| Q |
120 |
gaaaacaagcaaccactaatcaacctgtttccgaagtttctaataatgttccaacaaggacaaatttgtcaccttcatcctctctagctaaaatacctag |
219 |
Q |
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| T |
32055133 |
gaaaacaagcaaccactaatcaacctgtttccgaagtttctaataatgttccaataaggacaaatttgtcaccttcatcctctctagctaaaatacctag |
32055034 |
T |
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| Q |
220 |
tcttgattttagcaaaggcttgc |
242 |
Q |
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| T |
32055033 |
tcttgattttagcaaaggcttgc |
32055011 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 27680772 - 27680728
Alignment:
| Q |
47 |
tacctaggaatcccagatgaatctgttaacctcacttttcaagac |
91 |
Q |
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| T |
27680772 |
taccaaggaatcccagatgaatcagttaacctaacatttcaagac |
27680728 |
T |
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