View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10819_low_17 (Length: 242)
Name: NF10819_low_17
Description: NF10819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10819_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 35774884 - 35774662
Alignment:
| Q |
1 |
ttatagaaaaagacactagattcaccagcagaggacgacggaataagatgatcatcaataatagacatgatatcgctgcatatattggataattcagatt |
100 |
Q |
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| T |
35774884 |
ttatagaaaaagacactagattcaccagcagaggacgacggaataagatgatcatcaataatagacatgatatcgctgcatatattggataattcagatt |
35774785 |
T |
|
| Q |
101 |
ccaccttgtgtctatactcctttatcctcttcacattcacatcattccctttagattcttccttatgctcaattgaggatagaatcctccatgaagccct |
200 |
Q |
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| T |
35774784 |
ccaccttgtgtctatactcctttatcctcttcacattcacatcataccctttagattcttccttatgctcaattgaggatagaatcctccatgaagccct |
35774685 |
T |
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| Q |
201 |
atgagcacccactacgttcttgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
35774684 |
atgagcacccactacgttcttgt |
35774662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 32199886 - 32199789
Alignment:
| Q |
100 |
tccaccttgtgtctatactcctttatcctcttcacattcacatcattccctttagattcttccttatgctcaattgaggatagaatcctccatgaagc |
197 |
Q |
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| T |
32199886 |
tccaccttctgcctatactccttaatacgcttaacattcaattcattcccttttgattcttctttctgctcaattgatgataagatcctccatgaagc |
32199789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 191
Target Start/End: Original strand, 39359848 - 39359945
Alignment:
| Q |
94 |
tcagattccaccttgtgtctatactcctttatcctcttcacattcacatcattccctttagattcttccttatgctcaattgaggatagaatcctcca |
191 |
Q |
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| T |
39359848 |
tcagtttcaaccttgttcctatactccttaatccgtttcgcattcacatcatttcctttagtctcttccttttgctcaatggaagaaagaatcctcca |
39359945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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