View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10819_low_19 (Length: 240)
Name: NF10819_low_19
Description: NF10819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10819_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 13854864 - 13854693
Alignment:
| Q |
20 |
aagaataacatggcattgcaaaaactactatctccggaacgttactgattatcaaataacaaatcattgtcatccataaatcaagtcagcattggtctat |
119 |
Q |
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| T |
13854864 |
aagaataacatggcattgcaaaaactactatctccggaacgttactgattatcaaataacaaatcattgtcatccataaatcaagtcagcattggtctat |
13854765 |
T |
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| Q |
120 |
gaagttatgctatcctttcaaagaataatacattagcctaaagatattatacagaaataaaacaaaggcata |
191 |
Q |
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| T |
13854764 |
gaagttatgctatcatttcaaagactaatacattagcctaaagatattatacagaaataaaacaaaggcata |
13854693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 10215653 - 10215764
Alignment:
| Q |
18 |
ccaagaataacatggcattgcaaaaactactatctccggaacgttactgattatcaaataacaaatcattgtcatccataaatcaagtcagcattggtct |
117 |
Q |
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| T |
10215653 |
ccaagagtaacattgtattgcagaaaccactatctccagaatgttactgattatcatataactaatcattattatcaataaatcaagtcaacataggtct |
10215752 |
T |
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| Q |
118 |
atgaagttatgc |
129 |
Q |
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| T |
10215753 |
atgaagttatgc |
10215764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 10107785 - 10107690
Alignment:
| Q |
89 |
tcatccataaatcaagtcagcattggtctatgaagttatgctatcctttcaaagaataatacattagcctaaagatattatacagaaataaaacaaa |
185 |
Q |
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| T |
10107785 |
tcatctataaatcaagtcaacaatggtctatgaaattatgcaatcatctc-aagactaatacattagcataaacaaattatacggaaatgaaacaaa |
10107690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 10104305 - 10104234
Alignment:
| Q |
89 |
tcatccataaatcaagtcagcattggtctatgaagttatgctatcctttcaaagaataatacattagcctaaa |
161 |
Q |
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||||| ||||||||||||| || ||||||||||| |||||| ||| | || |||| |||||||||||| |||| |
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| T |
10104305 |
tcatctataaatcaagtcaacaatggtctatgaaattatgcaatcatctc-aagactaatacattagcataaa |
10104234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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