View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10819_low_21 (Length: 238)

Name: NF10819_low_21
Description: NF10819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10819_low_21
NF10819_low_21
[»] chr4 (17 HSPs)
chr4 (18-113)||(40391670-40391765)
chr4 (18-113)||(40380329-40380424)
chr4 (32-113)||(41054701-41054782)
chr4 (117-225)||(13307885-13307993)
chr4 (117-164)||(39619045-39619092)
chr4 (126-225)||(44362674-44362773)
chr4 (181-224)||(10164861-10164904)
chr4 (114-220)||(37496717-37496834)
chr4 (188-238)||(4090097-4090147)
chr4 (114-164)||(5998885-5998935)
chr4 (178-219)||(12895120-12895161)
chr4 (186-225)||(10634998-10635037)
chr4 (178-225)||(13117437-13117484)
chr4 (145-219)||(29205458-29205532)
chr4 (178-215)||(11797632-11797669)
chr4 (181-225)||(13484031-13484076)
chr4 (178-219)||(21945517-21945558)
[»] chr6 (15 HSPs)
chr6 (120-225)||(1334669-1334774)
chr6 (114-168)||(785384-785438)
chr6 (118-225)||(26402624-26402733)
chr6 (178-225)||(6751886-6751933)
chr6 (178-225)||(19369825-19369872)
chr6 (111-225)||(32225327-32225441)
chr6 (182-225)||(10031578-10031621)
chr6 (114-164)||(34197185-34197235)
chr6 (141-219)||(34595148-34595226)
chr6 (178-225)||(785459-785507)
chr6 (114-174)||(26178542-26178602)
chr6 (176-219)||(10157998-10158041)
chr6 (145-219)||(28715309-28715383)
chr6 (180-225)||(5579662-5579707)
chr6 (142-219)||(16833322-16833399)
[»] chr2 (7 HSPs)
chr2 (114-225)||(43585945-43586056)
chr2 (180-225)||(13501084-13501129)
chr2 (181-224)||(14450802-14450845)
chr2 (181-223)||(44984657-44984699)
chr2 (114-163)||(14450707-14450756)
chr2 (182-223)||(24067263-24067304)
chr2 (178-226)||(24067757-24067805)
[»] chr7 (12 HSPs)
chr7 (113-213)||(25956465-25956564)
chr7 (114-225)||(5937361-5937472)
chr7 (126-225)||(1885581-1885675)
chr7 (117-175)||(48963995-48964053)
chr7 (181-225)||(2144546-2144590)
chr7 (181-225)||(44317293-44317337)
chr7 (178-219)||(7438720-7438761)
chr7 (178-223)||(22801745-22801790)
chr7 (187-223)||(2143866-2143902)
chr7 (181-225)||(9050140-9050184)
chr7 (178-214)||(36013802-36013838)
chr7 (181-225)||(37820088-37820132)
[»] scaffold0314 (1 HSPs)
scaffold0314 (118-225)||(8956-9061)
[»] scaffold0122 (1 HSPs)
scaffold0122 (114-174)||(10247-10307)
[»] chr3 (6 HSPs)
chr3 (145-225)||(14338454-14338534)
chr3 (115-212)||(34834869-34834965)
chr3 (145-219)||(20503479-20503553)
chr3 (178-225)||(49179719-49179766)
chr3 (153-219)||(10954966-10955032)
chr3 (189-219)||(11093584-11093614)
[»] chr5 (11 HSPs)
chr5 (180-225)||(21319951-21319996)
chr5 (178-225)||(10010562-10010609)
chr5 (178-221)||(15294943-15294986)
chr5 (178-225)||(30080505-30080552)
chr5 (112-225)||(7621168-7621286)
chr5 (115-155)||(9031879-9031919)
chr5 (178-225)||(19167580-19167628)
chr5 (181-225)||(38784814-38784858)
chr5 (180-225)||(15302533-15302576)
chr5 (177-219)||(24906304-24906346)
chr5 (178-219)||(8420041-8420082)
[»] chr8 (7 HSPs)
chr8 (180-223)||(31119097-31119140)
chr8 (118-225)||(34073922-34074029)
chr8 (180-225)||(26915246-26915291)
chr8 (181-221)||(42874534-42874574)
chr8 (182-225)||(27733855-27733898)
chr8 (145-219)||(36450725-36450799)
chr8 (178-219)||(31548297-31548338)
[»] chr1 (7 HSPs)
chr1 (184-223)||(24462280-24462319)
chr1 (117-163)||(18950996-18951041)
chr1 (177-225)||(40686761-40686809)
chr1 (182-229)||(18946042-18946089)
chr1 (178-219)||(38078665-38078706)
chr1 (181-225)||(28170390-28170433)
chr1 (181-225)||(46748915-46748959)
[»] scaffold0652 (1 HSPs)
scaffold0652 (141-219)||(429-507)
[»] scaffold0504 (1 HSPs)
scaffold0504 (114-163)||(8642-8691)
[»] scaffold0050 (1 HSPs)
scaffold0050 (146-219)||(70292-70365)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 40391765 - 40391670
Alignment:
Q  18 tcatgaacggagatgctaatcctagaatgtcatgaatgtccatgttctctggatgcacaagatgaaattttgaaagataaagtttagcatagtaag 113  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40391765 tcatgaacagagatgctaatcctagaatgtcatgaatgtccatgttctctggatgcacgagatgaaattttgaaagataaagtttagcatagtaag 40391670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 40380424 - 40380329
Alignment:
Q  18 tcatgaacggagatgctaatcctagaatgtcatgaatgtccatgttctctggatgcacaagatgaaattttgaaagataaagtttagcatagtaag 113  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40380424 tcatgaacagagatgctaatcctagaatgtcatgaatgttcatgttctctggatgcacgagatgaaattttgaaagataaagtttagcatagtaag 40380329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 41054701 - 41054782
Alignment:
Q  32 gctaatcctagaatgtcatgaatgtccatgttctctggatgcacaagatgaaattttgaaagataaagtttagcatagtaag 113  Q
    ||||||||| |||||||  |||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  41054701 gctaatcctggaatgtcgcgaatgtccttgttctctggatgtacaagctgaaattttgaaagataaaatttagcatagtaag 41054782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 13307993 - 13307885
Alignment:
Q  117 tgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattttttc 216  Q
    ||||||||  ||||||||| |||||||  |||| ||||||| ||||||  ||||||||   ||| |||||||||||||| ||||||||||||||||| ||    
T  13307993 tgttgcaccaacacttctgattgaaggcatgtcatggtgtctgacacgtgtcgtgtccgacaccaacacttgtgattacattgaattatgtcattttctc 13307894  T
Q  217 aaaatttta 225  Q
    |||||||||    
T  13307893 aaaatttta 13307885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 39619045 - 39619092
Alignment:
Q  117 tgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacg 164  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||    
T  39619045 tgttgcacggacacttctgattgaaggtgtgtcccggtgtccgacacg 39619092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 44362773 - 44362674
Alignment:
Q  126 gacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||||||| || ||||||||||| | ||||||| |||  |||||||    ||| |||||||||||||| || |||||||||||||| |||||||||||    
T  44362773 gacacttctgatttaaggtgtgtcccgatgtccgatacgtgtcgtgtctgacaccaacacttgtgattacattaaattatgtcattttctcaaaatttta 44362674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 10164861 - 10164904
Alignment:
Q  181 gacacttgtgattactttgaattatgtcattttttcaaaatttt 224  Q
    ||||||||||||||| |||||||||||||||||||||| |||||    
T  10164861 gacacttgtgattacattgaattatgtcattttttcaagatttt 10164904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 37496834 - 37496717
Alignment:
Q  114 ctctgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtccagta-----------ccgacacttgtgattactttgaat 202  Q
    ||||||||||||||||||| || ||||||| |||||| ||||||||||| |  |||||||| | |           ||||||||||||||||| ||||||    
T  37496834 ctctgttgcacggacacttatgattgaaggcgtgtcccggtgtccgacatgtgtcgtgtccggcaacgacacaacaccgacacttgtgattacattgaat 37496735  T
Q  203 tatgtcattttttcaaaa 220  Q
    ||||||||||| ||||||    
T  37496734 tatgtcattttctcaaaa 37496717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 4090097 - 4090147
Alignment:
Q  188 gtgattactttgaattatgtcattttttcaaaattttactggggtcaacat 238  Q
    |||||| |||||| |||||||||||| |||||||||||| |||||||||||    
T  4090097 gtgattgctttgagttatgtcattttctcaaaattttaccggggtcaacat 4090147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 5998935 - 5998885
Alignment:
Q  114 ctctgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacg 164  Q
    ||||||||||| ||||||| || |||||||||||||| |||||||||||||    
T  5998935 ctctgttgcaccgacacttatgattgaaggtgtgtccaggtgtccgacacg 5998885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 12895120 - 12895161
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  12895120 accgacacttgtaattactttgaattatgtgattttttcaaa 12895161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 10635037 - 10634998
Alignment:
Q  186 ttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  10635037 ttgtgataacattgaattatgtcattttttcaaaatttta 10634998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 13117484 - 13117437
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||||||||||||||| ||||||| ||||||||| || ||||||||    
T  13117484 accgacacttgtgattacattgaattttgtcattttctccaaatttta 13117437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 29205532 - 29205458
Alignment:
Q  145 gtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    |||||| |||||| |||| |  |||||||||  |||||||||||| |||||  |||||||||| |||||||||||    
T  29205532 gtgtcccggtgtcggacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtgattttttcaaa 29205458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 11797632 - 11797669
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcatttttt 215  Q
    |||||||||||||||||| || ||||||||||||||||    
T  11797632 accgacacttgtgattacattaaattatgtcatttttt 11797669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 13484076 - 13484031
Alignment:
Q  181 gacacttgtgattac-tttgaattatgtcattttttcaaaatttta 225  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||    
T  13484076 gacacttgtgattacatttgaattatgttattttctcaaaatttta 13484031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 21945558 - 21945517
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    |||||||||||| |||||  ||||||||||||||||||||||    
T  21945558 accgacacttgtaattacactgaattatgtcattttttcaaa 21945517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 1334774 - 1334669
Alignment:
Q  120 tgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||| |   ||||||| |||||||||| |||||||||||| ||||||||||    
T  1334774 tgcacggacacttctgattgaaggtgtgtcctggtgttcgacacgcatcgtgttcgacaccgacatttgtgattacattgaattatgtccttttttcaaa 1334675  T
Q  220 atttta 225  Q
    ||||||    
T  1334674 atttta 1334669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 785384 - 785438
Alignment:
Q  114 ctctgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcatc 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  785384 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatc 785438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 26402624 - 26402733
Alignment:
Q  118 gttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtca--tttttt 215  Q
    |||||||||||||||||| ||||||  |||||  ||||||| ||| | |||||||||   ||||||||||||||||||  ||||||||||||  ||||||    
T  26402624 gttgcacggacacttctgattgaagaagtgtctcggtgtccaacatgtatcgtgtccgacaccgacacttgtgattacactgaattatgtcatttttttt 26402723  T
Q  216 caaaatttta 225  Q
    ||||||||||    
T  26402724 caaaatttta 26402733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 6751886 - 6751933
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||    
T  6751886 accgacacttgtgattacattgaattatgtcattttctcaaaatttta 6751933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 19369872 - 19369825
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||    
T  19369872 accgacacttgtgattacattgaattatgtcattttctcaaaatttta 19369825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 32225327 - 32225441
Alignment:
Q  111 aagctctgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcat 210  Q
    |||||||| |||||  ||||| ||| |||||||||||||| ||||||||||| |  ||||||||   |||||||| ||||||||| |||| | | || ||    
T  32225327 aagctctgctgcacaaacactcctgattgaaggtgtgtccaggtgtccgacaggggtcgtgtccgacaccgacacctgtgattacattgactcacgttat 32225426  T
Q  211 tttttcaaaatttta 225  Q
    ||| |||||||||||    
T  32225427 tttctcaaaatttta 32225441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 10031621 - 10031578
Alignment:
Q  182 acacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  10031621 acacttgtgattacattgaattatgtcattttctcaaaatttta 10031578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 34197235 - 34197185
Alignment:
Q  114 ctctgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacg 164  Q
    |||| |||||| ||||||||| ||||||||||||||||||| |||||||||    
T  34197235 ctctattgcactgacacttctagttgaaggtgtgtcctggtctccgacacg 34197185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 34595226 - 34595148
Alignment:
Q  141 aggtgtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    |||||||||| |||||| ||||||  ||||||||   |||||||||||| |||||  |||||||||| |||||||||||    
T  34595226 aggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaa 34595148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 785459 - 785507
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcatt-ttttcaaaatttta 225  Q
    |||||||||||||||||| ||||||||||||||| |||| |||||||||    
T  785459 accgacacttgtgattacattgaattatgtcattattttgaaaatttta 785507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 26178602 - 26178542
Alignment:
Q  114 ctctgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtcc 174  Q
    ||||| |||||||||||||||| |||||||| ||||| | |||||||||||  ||||||||    
T  26178602 ctctgatgcacggacacttctgattgaaggtatgtcccgatgtccgacacgtgtcgtgtcc 26178542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 10158041 - 10157998
Alignment:
Q  176 gtaccgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    |||||||||| ||||||||| ||||||||||||||||| |||||    
T  10158041 gtaccgacacatgtgattacattgaattatgtcattttctcaaa 10157998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 28715383 - 28715309
Alignment:
Q  145 gtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    |||||| ||||||  |||||  ||||||||   |||||||||||| |||||  ||||||||||||||||||||||    
T  28715383 gtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaa 28715309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 5579707 - 5579662
Alignment:
Q  180 cgacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||||||||| ||| ||||| ||||||||||| |||||||||||    
T  5579707 cgacacttgtgactacattgaactatgtcattttctcaaaatttta 5579662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 16833399 - 16833322
Alignment:
Q  142 ggtgtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    |||||||||||||||| ||| ||  ||||||| |  |||||||||||| |||||  |||| ||||| |||||||||||    
T  16833399 ggtgtgtcctggtgtcggacgcgtgtcgtgtctaacaccgacacttgtaattacactgaagtatgtgattttttcaaa 16833322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 43585945 - 43586056
Alignment:
Q  114 ctctgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcatttt 213  Q
    |||||||||||| ||||||||| ||||||||||||||  ||||| |||||| |||||||||   |||||||||||||||||| |||||||||||||||||    
T  43585945 ctctgttgcacgaacacttctgattgaaggtgtgtccatgtgtctgacacgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 43586044  T
Q  214 ttcaaaatttta 225  Q
     |||||||||||    
T  43586045 ctcaaaatttta 43586056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 13501084 - 13501129
Alignment:
Q  180 cgacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||||||||||||| ||||||||||||||||| | |||||||||    
T  13501084 cgacacttgtgattacattgaattatgtcattttcttaaaatttta 13501129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 14450802 - 14450845
Alignment:
Q  181 gacacttgtgattactttgaattatgtcattttttcaaaatttt 224  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||    
T  14450802 gacacttgtgattacattgaattatgtgattttctcaaaatttt 14450845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 44984657 - 44984699
Alignment:
Q  181 gacacttgtgattactttgaattatgtcattttttcaaaattt 223  Q
    |||||||||||| || ||||||||| |||||||||||||||||    
T  44984657 gacacttgtgatcacattgaattatatcattttttcaaaattt 44984699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 14450707 - 14450756
Alignment:
Q  114 ctctgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacac 163  Q
    |||||||||||||||||||||| ||||||  |||||| |||||| |||||    
T  14450707 ctctgttgcacggacacttctgattgaagacgtgtcccggtgtctgacac 14450756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 24067304 - 24067263
Alignment:
Q  182 acacttgtgattactttgaattatgtcattttttcaaaattt 223  Q
    |||||||||||||| |||||||||||||||||  ||||||||    
T  24067304 acacttgtgattacattgaattatgtcattttcacaaaattt 24067263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 24067805 - 24067757
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttttcaaaattttac 226  Q
    |||||||||||||||| | || ||||||| |||||| ||||||||||||    
T  24067805 accgacacttgtgatttcatttaattatgacattttctcaaaattttac 24067757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 25956564 - 25956465
Alignment:
Q  113 gctctgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattt 212  Q
    ||||| ||||||||||||||||| ||||||| |||||| | ||||||||| | |||||||||   |||||||||||||||||| ||||||||||||||||    
T  25956564 gctctattgcacggacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcattt 25956466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 5937361 - 5937472
Alignment:
Q  114 ctctgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcatttt 213  Q
    |||| |||||||||||||||   ||||||| || | ||||||||||||| | |||||| ||   || ||||||||||||||| |||||||||||||||||    
T  5937361 ctctattgcacggacacttcatattgaaggcgtattctggtgtccgacatgtatcgtgaccgacacagacacttgtgattacattgaattatgtcatttt 5937460  T
Q  214 ttcaaaatttta 225  Q
     |||||||||||    
T  5937461 ctcaaaatttta 5937472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 1885675 - 1885581
Alignment:
Q  126 gacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||||||| ||||| ||||||||||||||||||||| || |  | |    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  1885675 gacacttctgattgaacgtgtgtcctggtgtccgacac-caacacgac----accgacacttgtgattacattgaattatgtcattttttcaaaatttta 1885581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 48963995 - 48964053
Alignment:
Q  117 tgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtcca 175  Q
    ||||||| ||||||||||| |||||||| ||||| ||||| ||||||| ||||||||||    
T  48963995 tgttgcatggacacttctgattgaaggtatgtcccggtgttcgacacgtatcgtgtcca 48964053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 2144546 - 2144590
Alignment:
Q  181 gacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||    
T  2144546 gacacgtgtgattacattgaattatgtcattttctcaaaatttta 2144590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 44317293 - 44317337
Alignment:
Q  181 gacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    ||||||| ||||||| ||||||||||||||||||| |||||||||    
T  44317293 gacacttatgattacattgaattatgtcatttttttaaaatttta 44317337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 7438761 - 7438720
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    |||||||||||| ||||| ||||||||||| |||||||||||    
T  7438761 accgacacttgtaattacattgaattatgtgattttttcaaa 7438720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 22801745 - 22801790
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttttcaaaattt 223  Q
    ||||||||||||||||||  |||||||||||||| | |||||||||    
T  22801745 accgacacttgtgattacagtgaattatgtcattatctcaaaattt 22801790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 2143866 - 2143902
Alignment:
Q  187 tgtgattactttgaattatgtcattttttcaaaattt 223  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  2143866 tgtgattacattgaattatgtcattttctcaaaattt 2143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 9050140 - 9050184
Alignment:
Q  181 gacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    ||||| ||||||||  ||||| |||||||||||||||||||||||    
T  9050140 gacacatgtgattatattgaactatgtcattttttcaaaatttta 9050184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 36013802 - 36013838
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttt 214  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  36013802 accgacacgtgtgattacattgaattatgtcattttt 36013838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 37820132 - 37820088
Alignment:
Q  181 gacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||||| |||||| || |||||||| |||||||||||||||||    
T  37820132 gacacttgcgattacattaaattatgttattttttcaaaatttta 37820088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 9061 - 8956
Alignment:
Q  118 gttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcat--cgtgtccagtaccgacacttgtgattactttgaattatgtcatttttt 215  Q
    ||||||| |||||||||| ||||||| |||||| |||||||||||| ||   | || |    |||||||||||||||||| ||||||||||||||||| |    
T  9061 gttgcacagacacttctgattgaaggcgtgtcccggtgtccgacacacacgacatgac----accgacacttgtgattacgttgaattatgtcattttct 8966  T
Q  216 caaaatttta 225  Q
    ||||||||||    
T  8965 caaaatttta 8956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 10247 - 10307
Alignment:
Q  114 ctctgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtcc 174  Q
    |||| |||||| |||||||||| |||||||||||||||| |||||||||||||||| ||||    
T  10247 ctctcttgcacagacacttctgattgaaggtgtgtcctgctgtccgacacgcatcgcgtcc 10307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 14338454 - 14338534
Alignment:
Q  145 gtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||| ||||||||| |||  |||||||    ||||||| |||||||||| |||||||||||||||||||||||||||||    
T  14338454 gtgtcccggtgtccgatacgtgtcgtgtctgacaccgacatttgtgattacattgaattatgtcattttttcaaaatttta 14338534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 34834869 - 34834965
Alignment:
Q  115 tctgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattt 212  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||| | |||  ||||   ||||| ||| |||||||  ||||||||||||||||    
T  34834869 tctgttgcacggacacttctgattgaaggcgtgtcccggtgtccgacatgtatcaagtccgacaccgatactcgtgatta-attgaattatgtcattt 34834965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 20503553 - 20503479
Alignment:
Q  145 gtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    |||||| |||||| |||| |  |||||||||  |||||||||||| |||||  ||||||||||||||||||||||    
T  20503553 gtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtcattttttcaaa 20503479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 49179719 - 49179766
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||||||||||||||| | ||||||||||| ||| |||||||||||    
T  49179719 accgacacttgtgattacatcgaattatgtcactttctcaaaatttta 49179766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 10955032 - 10954966
Alignment:
Q  153 gtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    ||||| ||||||  ||||||||   ||||||||||||||||||  |||||||||| |||||||||||    
T  10955032 gtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacactgaattatgtgattttttcaaa 10954966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 219
Target Start/End: Complemental strand, 11093614 - 11093584
Alignment:
Q  189 tgattactttgaattatgtcattttttcaaa 219  Q
    |||||||||||||||||||||||||||||||    
T  11093614 tgattactttgaattatgtcattttttcaaa 11093584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 21319951 - 21319996
Alignment:
Q  180 cgacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||    
T  21319951 cgacacttgtgattacattgaattatatcattttttcaaaatttta 21319996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 10010609 - 10010562
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||||| |||||||||  ||||||||||||||||||||||||||||    
T  10010609 accgacacatgtgattacaatgaattatgtcattttttcaaaatttta 10010562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 15294986 - 15294943
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttttcaaaat 221  Q
    |||| ||||||||||||| |||||||||||||||||||||||||    
T  15294986 accggcacttgtgattaccttgaattatgtcattttttcaaaat 15294943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 30080505 - 30080552
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    ||||| |||||||||||| ||||||||||||||||| |||||||||||    
T  30080505 accgatacttgtgattacattgaattatgtcattttctcaaaatttta 30080552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 7621168 - 7621286
Alignment:
Q  112 agctctgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtccagt-----accgacacttgtgattactttgaattatg 206  Q
    |||||||||||||||||||||||| ||||||  |||||||| ||||||| | | ||||||||   |     ||||| |||||||||||| || |||||||    
T  7621168 agctctgttgcacggacacttctgattgaagacgtgtcctgatgtccgataagtatcgtgtctgatatgacaccgatacttgtgattacattaaattatg 7621267  T
Q  207 tcattttttcaaaatttta 225  Q
    ||| |||||  ||||||||    
T  7621268 tcaatttttttaaatttta 7621286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 9031879 - 9031919
Alignment:
Q  115 tctgttgcacggacacttctggttgaaggtgtgtcctggtg 155  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  9031879 tctgttgcacggacacttctgattgaaggcgtgtcctggtg 9031919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 19167580 - 19167628
Alignment:
Q  178 accgacacttgtgattactttgaattatgtca-ttttttcaaaatttta 225  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||||    
T  19167580 accgacacttgtgattacattgaattgtgtcatttttttcaaaatttta 19167628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 38784858 - 38784814
Alignment:
Q  181 gacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||    
T  38784858 gacacttgtgattacattgaattatatcattttttcacaatttta 38784814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 15302576 - 15302533
Alignment:
Q  180 cgacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||||||||||||| |||||||  ||||||||||||||||||||    
T  15302576 cgacacttgtgattaccttgaatt--gtcattttttcaaaatttta 15302533  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 24906304 - 24906346
Alignment:
Q  177 taccgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    ||||||||||||| |||||  ||||||||||||||||||||||    
T  24906304 taccgacacttgtaattacactgaattatgtcattttttcaaa 24906346  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 8420082 - 8420041
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    |||||||||||| ||||| ||||||||||| |||||||||||    
T  8420082 accgacacttgtaattacattgaattatgttattttttcaaa 8420041  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 31119140 - 31119097
Alignment:
Q  180 cgacacttgtgattactttgaattatgtcattttttcaaaattt 223  Q
    |||||||||||||||| ||||||||||||||||| |||||||||    
T  31119140 cgacacttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 34073922 - 34074029
Alignment:
Q  118 gttgcacggacacttctggttgaaggtgtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattttttca 217  Q
    |||||||  |||||| || ||||||| ||||| || ||| |||||||   ||||||   || |||||||| ||||||| || ||||||||||||||||||    
T  34073922 gttgcacaaacacttttgattgaaggcgtgtcatgatgtgcgacacgtgacgtgtctgatatcgacacttatgattacattaaattatgtcattttttca 34074021  T
Q  218 aaatttta 225  Q
    ||||||||    
T  34074022 aaatttta 34074029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 26915246 - 26915291
Alignment:
Q  180 cgacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||||||||||||| || |||||||||||||| |||||||||||    
T  26915246 cgacacttgtgattacattaaattatgtcattttctcaaaatttta 26915291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 42874574 - 42874534
Alignment:
Q  181 gacacttgtgattactttgaattatgtcattttttcaaaat 221  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  42874574 gacacttgtgattacattgaattatgtcattttctcaaaat 42874534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 27733898 - 27733855
Alignment:
Q  182 acacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||||||||||||| ||||||||| ||||||| |||||||||||    
T  27733898 acacttgtgattacattgaattatatcattttctcaaaatttta 27733855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 36450725 - 36450799
Alignment:
Q  145 gtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    ||||||||||||| ||||||| ||||||||   ||| |||||||| |||||  |||||| ||| |||||||||||    
T  36450725 gtgtcctggtgtcggacacgcgtcgtgtccgacacctacacttgtaattacactgaattctgtgattttttcaaa 36450799  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 31548297 - 31548338
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    |||||||| ||||||||| ||||||||||||||||| |||||    
T  31548297 accgacacatgtgattacattgaattatgtcattttatcaaa 31548338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 24462280 - 24462319
Alignment:
Q  184 acttgtgattactttgaattatgtcattttttcaaaattt 223  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  24462280 acttgtgattacattgaattatgtcattttttcaaaattt 24462319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 18951041 - 18950996
Alignment:
Q  117 tgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacac 163  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  18951041 tgttgcacg-acacttctgattgaaggtgtgtcctggtgtccgacac 18950996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 40686761 - 40686809
Alignment:
Q  177 taccgacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    ||||||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  40686761 taccgacacttatgattacattgaattatatcattttatcaaaatttta 40686809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 18946042 - 18946089
Alignment:
Q  182 acacttgtgattactttgaattatgtcattttttcaaaattttactgg 229  Q
    ||||| |||||||| ||||||||||||||||| ||||||||| |||||    
T  18946042 acactcgtgattacattgaattatgtcattttctcaaaatttgactgg 18946089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 38078665 - 38078706
Alignment:
Q  178 accgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    |||||||||||| ||||| ||||||||||| |||||||||||    
T  38078665 accgacacttgtaattacattgaattatgtgattttttcaaa 38078706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 28170433 - 28170390
Alignment:
Q  181 gacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||||    
T  28170433 gacacttgttattacattgaattatgtcat-ttttcaaaatttta 28170390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 46748915 - 46748959
Alignment:
Q  181 gacacttgtgattactttgaattatgtcattttttcaaaatttta 225  Q
    |||| |||||||||| ||||| |||||| ||||||||||||||||    
T  46748915 gacatttgtgattacattgaactatgtcgttttttcaaaatttta 46748959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 429 - 507
Alignment:
Q  141 aggtgtgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    |||||||||| |||||| ||||||| ||||||||   |||||||||||| |||||  |||||| ||| |||||||||||    
T  429 aggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactgaattttgtgattttttcaaa 507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 8642 - 8691
Alignment:
Q  114 ctctgttgcacggacacttctggttgaaggtgtgtcctggtgtccgacac 163  Q
    |||||||||||||||||||||| |||||||  ||||| |||||| |||||    
T  8642 ctctgttgcacggacacttctgattgaaggcatgtcccggtgtctgacac 8691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 70365 - 70292
Alignment:
Q  146 tgtcctggtgtccgacacgcatcgtgtccagtaccgacacttgtgattactttgaattatgtcattttttcaaa 219  Q
    |||||||||||| ||||||  ||||||||   |||||||||| | |||||  |||||||||| |||||||||||    
T  70365 tgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgttattttttcaaa 70292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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