View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10819_low_22 (Length: 237)
Name: NF10819_low_22
Description: NF10819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10819_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 52716375 - 52716165
Alignment:
| Q |
10 |
tagcatagggatcattggaagatataaaatggaaagatagtaatggaactgcgaaaacagcgacaaaacggtttataccagaacattgatctggtgtgaa |
109 |
Q |
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| T |
52716375 |
tagcataaggatcattggaagatataaaatggaaagatagtaatggaactgcgaaaacagcgacaaaacggtttataccagaacattgatctggtgtgaa |
52716276 |
T |
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| Q |
110 |
gattttccaccaacgaactgaaccgtatgctaatatcatagcaacatatagcggcacaattgctgcgaaaacatcgtatatatccttaccggtaatcatg |
209 |
Q |
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| T |
52716275 |
gattttccaccaacgaactgaaccgtatgctaatatcatagcaacatatagcggcacaattgctgcgaaaacatcgtatatatccttaccggtaatcatg |
52716176 |
T |
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| Q |
210 |
gttatagatag |
220 |
Q |
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||||||||||| |
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| T |
52716175 |
gttatagatag |
52716165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 52711067 - 52710858
Alignment:
| Q |
10 |
tagcatagggatcattggaagatataaaatggaaagatagtaatggaactgcgaaaacagcgacaaaacggtttataccagaacattgatctggtgtgaa |
109 |
Q |
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| T |
52711067 |
tagcataaggatcattggatgaaataaaatggaatgatagtaacggaactgcaaaaaccgagacaaaacggtttattccagaacattgatctggtgtgaa |
52710968 |
T |
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| Q |
110 |
gattttccaccaacgaactgaaccgtatgctaatatcatagcaacatatagcggcacaattgctgcgaaaacatcgtatatatccttaccggtaatcatg |
209 |
Q |
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| T |
52710967 |
gattttccaccatcggaccgaaccatatgctaatatcatagcgacatatagtggcacaatcgccgctaaaacattgtatatgtccttgccggtaatcatg |
52710868 |
T |
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| Q |
210 |
gttatagata |
219 |
Q |
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|||||||||| |
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| T |
52710867 |
gttatagata |
52710858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 33102048 - 33101981
Alignment:
| Q |
54 |
ggaactgcgaaaacagcgacaaaacggtttataccagaacattgatctggtgtgaagattttccacca |
121 |
Q |
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| T |
33102048 |
ggaactgcgaaaatcgcgacgaaacggtttatgccggaacattggtccggtgagaatattttccacca |
33101981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 159
Target Start/End: Original strand, 10839040 - 10839139
Alignment:
| Q |
60 |
gcgaaaacagcgacaaaacggtttataccagaacattgatctggtgtgaagattttccaccaacgaactgaaccgtatgctaatatcatagcaacatata |
159 |
Q |
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| T |
10839040 |
gcgaaaaccgcgacaaaacggtttataccggaacattgatccggtgagaaaatcttccaccaacggaccgaaccgtaggctaagatcatagcaacatata |
10839139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 9970359 - 9970432
Alignment:
| Q |
42 |
aaagatagtaatggaactgcgaaaacagcgacaaaacggtttataccagaacattgatctggtgtgaagatttt |
115 |
Q |
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| T |
9970359 |
aaagatagaactggaacagcaaaaactgcgacgaatcggtttatgccggaacattgatctggggtgaacatttt |
9970432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 34970841 - 34970773
Alignment:
| Q |
53 |
tggaactgcgaaaacagcgacaaaacggtttataccagaacattgatctggtgtgaagattttccacca |
121 |
Q |
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||||||||| |||| || |||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
34970841 |
tggaactgcaaaaagtgctacaaaacggtttatgcctgaacattgatctggtgtgaagattttccacca |
34970773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 16761382 - 16761431
Alignment:
| Q |
72 |
acaaaacggtttataccagaacattgatctggtgtgaagattttccacca |
121 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
16761382 |
acaaaacggtttataccagcacattgatctggtgtaaagattttccacca |
16761431 |
T |
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