View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10819_low_24 (Length: 231)
Name: NF10819_low_24
Description: NF10819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10819_low_24 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 1762604 - 1762403
Alignment:
| Q |
19 |
ctcatatccagcaaagaatatatttttgcaattatctatcatgaatctttctcttgaggtggcgtttggtaagaaactgtcaccatcactctcacatttc |
118 |
Q |
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| T |
1762604 |
ctcatatccagcaaagaatatatttttgcaattatctatcatgaatctttctcttgaagtggcgtttggtaagaaactgtcaccatcactctcacatttc |
1762505 |
T |
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| Q |
119 |
tttgcactatcaagtatcatttgcaagagatcttgttcatcatgagcatcaatttggcgnnnnnnnatcagctttgatatctttgagcttatctctttct |
218 |
Q |
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| T |
1762504 |
tttgcactatcaagtatcatttgcaagagatcttgttcatcatgagcatcaatttggcgttgttttatcagctttgatatctttgaacttatctctttct |
1762405 |
T |
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| Q |
219 |
ct |
220 |
Q |
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|| |
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| T |
1762404 |
ct |
1762403 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 19207536 - 19207487
Alignment:
| Q |
109 |
ctcacatttctttgcactatcaagtatcatttgcaagagatcttgttcat |
158 |
Q |
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| T |
19207536 |
ctcacaattttttgcaccctcaagtatcatttgcaagagatcttgttcat |
19207487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 9842 - 9798
Alignment:
| Q |
109 |
ctcacatttctttgcactatcaagtatcatttgcaagagatcttg |
153 |
Q |
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| T |
9842 |
ctcacaattcttagcaccctcaagtatcatttgcaagagatcttg |
9798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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