View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10819_low_25 (Length: 216)

Name: NF10819_low_25
Description: NF10819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10819_low_25
NF10819_low_25
[»] chr8 (9 HSPs)
chr8 (1-216)||(36212026-36212241)
chr8 (121-216)||(36191086-36191181)
chr8 (1-86)||(36198013-36198097)
chr8 (41-112)||(36190976-36191055)
chr8 (155-216)||(36198198-36198258)
chr8 (1-43)||(36190590-36190632)
chr8 (1-45)||(36209562-36209606)
chr8 (1-38)||(36188118-36188155)
chr8 (2-35)||(36201824-36201857)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 36212026 - 36212241
Alignment:
Q  1 atatccaaaattctaaattaaactttgaaaataaaacaactacaacaacatcataaccaaaacctaagtggttaagtaaactcacccttaaaaaatgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36212026 atatccaaaattctaaattaaactttgaaaataaaacaactacaacaacatcataaccaaaacctaagtggttaagtaaactcacccttaaaaaatgatt 36212125  T
Q  101 taacagccatgtatgttgtccatacaactactggcaactgtgtagtctatattttccagacctttaactagaagataaaaaatgcatattataaacatag 200  Q
    |||||||||||||||||| |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36212126 taacagccatgtatgttgcccatacaactactggcaactgtatagactatattatccagacctttaactagaagataaaaaatgcatattataaacatag 36212225  T
Q  201 gaaattaaattaatgc 216  Q
    ||||||||||||||||    
T  36212226 gaaattaaattaatgc 36212241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 36191086 - 36191181
Alignment:
Q  121 catacaactactggcaactgtgtagtctatattttccagacctttaactagaagataaaaaatgcatattataaacataggaaattaaattaatgc 216  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36191086 catacaactactggcaactgtatagactatattatccagacctttaactagaagataaaaaatgcatattataaacataggaatttaaattaatgc 36191181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 36198013 - 36198097
Alignment:
Q  1 atatccaaaattctaaattaaactttgaaaataaaacaactacaacaacatcataaccaaaacctaagtggttaagtaaactcacc 86  Q
    ||||||||| || ||||| |||||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||||||||    
T  36198013 atatccaaatttataaatgaaactttgaaaataaaacaactactacagcatca-aaccaaaatctaagtggttaagtaaactcacc 36198097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 36190976 - 36191055
Alignment:
Q  41 tacaacaacatcataaccaaaacctaagtggttaagtaa--------actcacccttaaaaaatgatttaacagccatgt 112  Q
    |||| ||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  36190976 tacagcaacatcataaccaaaacctaagtggttaagtaaacccaaccactcacccttaaaaaatgatttaacagccatgt 36191055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 36198198 - 36198258
Alignment:
Q  155 tccagacctttaactagaagataaaaaatgcatattataaacataggaaattaaattaatgc 216  Q
    ||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  36198198 tccagacgtttaactagaagataaaa-atgcatattataaacgtaggaaattaaattaatgc 36198258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 36190590 - 36190632
Alignment:
Q  1 atatccaaaattctaaattaaactttgaaaataaaacaactac 43  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  36190590 atatccaaaattttaaattaaactttgaaaataaaacaactac 36190632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36209562 - 36209606
Alignment:
Q  1 atatccaaaattctaaattaaactttgaaaataaaacaactacaa 45  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||||    
T  36209562 atattcaaaaatctaaattaaactttgaaaataaaacagctacaa 36209606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 36188118 - 36188155
Alignment:
Q  1 atatccaaaattctaaattaaactttgaaaataaaaca 38  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  36188118 atattcaaaattctaaattaaactttgaaaattaaaca 36188155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 36201824 - 36201857
Alignment:
Q  2 tatccaaaattctaaattaaactttgaaaataaa 35  Q
    ||||||||||||||||| ||||||||||||||||    
T  36201824 tatccaaaattctaaatgaaactttgaaaataaa 36201857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University