View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10819_low_4 (Length: 303)
Name: NF10819_low_4
Description: NF10819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10819_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 287
Target Start/End: Complemental strand, 39942745 - 39942471
Alignment:
| Q |
14 |
agaacttggagtcaccccatgttttaaaaattgattcaaacatca-agcagcgaggtttccaagtcatgttcaattgttttaaattgattgaacgaggac |
112 |
Q |
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| T |
39942745 |
agaacttggagtcatcccatgttttaaaaattgattcaaacatcacagcagggaggtttccaagtcatgttcaattgtttttaattgattgaaccaggac |
39942646 |
T |
|
| Q |
113 |
gaaaccacaatcaaactgtagatgttgctggttcagggttcaactagttgaaccatctgattcgatttttaaaatactgttattcattgaaaagatacaa |
212 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39942645 |
gaaaccgcaatcaaactgtagatgttgctggttcagggttcaactagttgaaccatctgattcgatttttaaaatactgttattcatagaaaagatacaa |
39942546 |
T |
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| Q |
213 |
tacattgtttgattagttgatgcaacgagttagtgtacctttcggagtggaaccaccgaaaagagaccaagaaag |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39942545 |
tacattgtttgattagttgatgcaacgagttagtgtacctttcggagtggaaccactgaaaagagaccaagaaag |
39942471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 28740203 - 28740363
Alignment:
| Q |
29 |
cccatgttttaaaaattgattcaaacatca-agcagcgaggtttccaagtcatgttcaattgttttaaattgattgaacgaggacgaaaccacaatcaaa |
127 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| |||| | ||| |||| |
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| T |
28740203 |
cccatgttttaaaaattgattcaaacatcgcagcagcgaggtttccaagtcatgttcaatcattataaattgattgaacgagggtgaaatcgcaaccaaa |
28740302 |
T |
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| Q |
128 |
ctgtagatgttgctggttcagggttcaactagttgaaccatctgattcgatttttaaaata |
188 |
Q |
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| T |
28740303 |
ctgtagacattgctcattcagggttcaattagctgaaccatctgatttgatttttaaaata |
28740363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 28740424 - 28740501
Alignment:
| Q |
211 |
aatacattgt-ttgattagttgatgcaacgagttagtgtacctttcggagtggaaccaccgaaaagagaccaagaaag |
287 |
Q |
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|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
28740424 |
aatacattgtattgattatttgatgcaacaagttagtgtacctttcggagtggaagcactgaaaagagaccaagaaag |
28740501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 28750226 - 28750273
Alignment:
| Q |
240 |
agttagtgtacctttcggagtggaaccaccgaaaagagaccaagaaag |
287 |
Q |
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| T |
28750226 |
agttagtgtacctttcggagtggaagcactgaaaagagaccaagaaag |
28750273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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