View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10819_low_5 (Length: 279)
Name: NF10819_low_5
Description: NF10819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10819_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 42663794 - 42664055
Alignment:
| Q |
1 |
gttggcggtggagctcagttgatctcacagcaagaatagtcaagaactattcgctannnnnnnnnatctattttgtctatctttcccttaatggataata |
100 |
Q |
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| T |
42663794 |
gttggcggtggagctcggttgatctaacagcaagaatagtcaagaactattcgctatttttttt-atctattttgtctatctttcccttaatggataata |
42663892 |
T |
|
| Q |
101 |
ctatttcnnnnnnnnnggtacaatagataatactatttcttactaatactaaatgcaagaaactaactagcagcttcgtgttttccgtgaaagactgaaa |
200 |
Q |
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||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42663893 |
ctatttctttttttt-ggtacaatggataatactatttcttacgaatactaaatgcaagaaactaactagcagctccgtgttttccgtgaaagactgaaa |
42663991 |
T |
|
| Q |
201 |
ttata-nnnnnnnngttatataaaaaataattgtaatagccaatttctctctatcatgtgtttc |
263 |
Q |
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||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
42663992 |
ttatatttttttttgttatataaaaaataattgtaatagtcaatttctatctatcatgtgtttc |
42664055 |
T |
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