View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10819_low_6 (Length: 271)
Name: NF10819_low_6
Description: NF10819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10819_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 10902067 - 10901823
Alignment:
| Q |
11 |
cagagacaacagctaccacattgttatggaccatggctaatttagtaaagaatcaaaagattcaagagaaactttatgatgaaattaaggaagttgtgaa |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10902067 |
cagacacaacagctaccacattgttatggaccatggctaatttagtaaagaatcaaaagattcaagagaaactttatgatgaaattaaggaagttgtgaa |
10901968 |
T |
|
| Q |
111 |
acacaacgaagaaattgaagatgaacatttgaaaaggatgccttatttgaaggcagtggtgttagaaacatttaggagacatccaccaggtcattttata |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10901967 |
acacaacgaagaaattgaagacgaacatttgaaaaggatgccttatttgaaggcagtggtgttagaaacatttaggagacatccaccaggtcattttata |
10901868 |
T |
|
| Q |
211 |
ttgcctagggcagttatacaagagactattttcgatggtcataaa |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10901867 |
ttgcctagggcagttatacaagagactattttcgatggtcataaa |
10901823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University