View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10820_low_1 (Length: 403)
Name: NF10820_low_1
Description: NF10820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10820_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 311
Target Start/End: Original strand, 41067238 - 41067539
Alignment:
| Q |
10 |
gcaaaggtgtatcatccctttttccagtcaattgttttgtcannnnnnncctaggtgtatgcaccattggtgttgccatgctggattcacccatcttgaa |
109 |
Q |
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| T |
41067238 |
gcaaaggtgtatcatccctttttccagtcaattgttttgtcatttttttcctaggtgtatgcaccattggtgttgccatgctggattcacccatcttgaa |
41067337 |
T |
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| Q |
110 |
aaatctcctatcaaaaactttattttctttcttctagcaaaatcccatatcaacacaagcacctttcacagcagaacaactcataggggaatatgattat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41067338 |
aaatctcctatcaaaaactttattttctttcttctagcaaaatcccatatcaacacaagcacctttcacagcacaacaactcataggggaatatgattat |
41067437 |
T |
|
| Q |
210 |
caaaatcattgtgaaatctgatcataacacaaaaaagaattacaaaaaattggttaaacacattgcactaggttatgtttttataacattatcattgttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41067438 |
caaaatcattgtgaaatctgatcataacacaaaaaagaattacaaaaaattggttaaaaacattgcactaggttatgtttttataacattatcattgttt |
41067537 |
T |
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| Q |
310 |
gt |
311 |
Q |
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|| |
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| T |
41067538 |
gt |
41067539 |
T |
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