View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10820_low_10 (Length: 252)
Name: NF10820_low_10
Description: NF10820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10820_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 49352776 - 49352536
Alignment:
| Q |
1 |
ctcgtacacaaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaatta |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352776 |
ctcgtacacaaactgaatgttcatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaatta |
49352677 |
T |
|
| Q |
101 |
gaaaaatcaaagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352676 |
gaaaaatcaaagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgt |
49352577 |
T |
|
| Q |
201 |
catcttctttttgtggtaaattccaaatctcactgtctctg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352576 |
catcttctttttgtggtaaattccaaatctcactgtctctg |
49352536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 49341397 - 49341164
Alignment:
| Q |
2 |
tcgtacacaaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattag |
101 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
49341397 |
tcgtacagaaactgaatgctaatatcttccaaggttttacccatgtttggtggtggaagaaaaccaaatgccacccatagcacactaacatcaaaattaa |
49341298 |
T |
|
| Q |
102 |
aaaaatcaaagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtc |
201 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||| |
|
|
| T |
49341297 |
taaatggaaagtacttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataactt--tttgatagcagacaaaatgtc |
49341200 |
T |
|
| Q |
202 |
atcttctttttgtggtaaattccaaatctcactgtc |
237 |
Q |
| |
|
|| |||||||||||||||| |||||| |||||||| |
|
|
| T |
49341199 |
gtcatctttttgtggtaaatcccaaatttcactgtc |
49341164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 19030726 - 19030639
Alignment:
| Q |
10 |
aaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaa |
97 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| || ||||| | |||||||||||||||||| |||||| |||| |||||||||| |
|
|
| T |
19030726 |
aaactgaatgctaatatctaccaaggttttacctctgtttggttgtggaagaaaaccaagtgcctcccataacacatgaacatgaaaa |
19030639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 32783503 - 32783733
Alignment:
| Q |
11 |
aactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatcaa |
110 |
Q |
| |
|
||||||||| || || ||||||||||||||||||| |||||||| |||||| |||||| || |||| |||| ||||||| | ||||| ||| || |
|
|
| T |
32783503 |
aactgaatgctagtaccttccaaggttttacccctgtttggtggcagaagaacaccaagcacctcccaaagcatcctaacatccatattagtaaatgtaa |
32783602 |
T |
|
| Q |
111 |
agttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttcttt |
210 |
Q |
| |
|
||| ||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
32783603 |
agtccttttgaaagagggagaagcaagtaaaacatcgttttaaataagaaggtaactgatcgtaacttaatttgatagcaggcaaaatgtcatcttcttt |
32783702 |
T |
|
| Q |
211 |
ttgtggtaaattccaaatctcactgtctctg |
241 |
Q |
| |
|
||| |||||||||||||| |||||||||||| |
|
|
| T |
32783703 |
ttgaggtaaattccaaatttcactgtctctg |
32783733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 237
Target Start/End: Complemental strand, 29751144 - 29750932
Alignment:
| Q |
25 |
atcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatcaaagttcttttcaaag |
124 |
Q |
| |
|
||||||||||||||||||| | |||||| ||||||||| |||| ||| |||| |||||| | ||| | ||||| ||| | |||| ||| ||||| |
|
|
| T |
29751144 |
atcttccaaggttttacccttgtttggtgatggaagaaaatcaagagcctcccaaagcacagtgacagaataattactaaagtggaagtcttttacaaag |
29751045 |
T |
|
| Q |
125 |
agagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtggtaaattcc |
224 |
Q |
| |
|
|| |||||||| ||||||||| |||||||||| || ||||| |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29751044 |
agggagaagcaggcaaaacatcgttttaaatatgagggtaattgatcaaaacttaatttgagagcaggcaaaatatcatcttctttttgtggtaaattcc |
29750945 |
T |
|
| Q |
225 |
aaatctcactgtc |
237 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
29750944 |
aaatctcattgtc |
29750932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 29602150 - 29602362
Alignment:
| Q |
25 |
atcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatcaaagttcttttcaaag |
124 |
Q |
| |
|
||||||||||||||||||| | |||||| ||||||||| |||| ||| |||| |||||| | ||| | || || ||| | |||| ||||| ||| |
|
|
| T |
29602150 |
atcttccaaggttttacccttgtttggtgatggaagaaaatcaagagcctcccaaagcacagtgacagtataagtaacaaatttgaagtctttttcgaag |
29602249 |
T |
|
| Q |
125 |
agagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtggtaaattcc |
224 |
Q |
| |
|
|| |||||||| ||||||||| ||||||||||||| ||||| |||||| |||||||||||| | |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29602250 |
agggagaagcaggcaaaacatcgttttaaataagatggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttctttttgtggtaaattcc |
29602349 |
T |
|
| Q |
225 |
aaatctcactgtc |
237 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
29602350 |
aaatctcattgtc |
29602362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 237
Target Start/End: Complemental strand, 29744111 - 29743899
Alignment:
| Q |
25 |
atcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatcaaagttcttttcaaag |
124 |
Q |
| |
|
||||||||||||||||||| | |||||| || |||| | |||| ||| |||| |||||| | |||||| |||| ||| |||||| ||| ||||| |
|
|
| T |
29744111 |
atcttccaaggttttacccttgtttggtgatgggagaagatcaagagcctcccaaagcacagtgacatgattattactaaatacaaagtcttttacaaag |
29744012 |
T |
|
| Q |
125 |
agagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtggtaaattcc |
224 |
Q |
| |
|
|| |||||||| ||||||||| |||| |||||||| ||||| |||||| |||||||||||| | |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
29744011 |
agggagaagcaggcaaaacatcgtttcaaataagacggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttttttttgtggtaaattcc |
29743912 |
T |
|
| Q |
225 |
aaatctcactgtc |
237 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
29743911 |
aaatctcattgtc |
29743899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 35158171 - 35158050
Alignment:
| Q |
116 |
ttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtg |
215 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | || |||||||| || |||||||| | |
|
|
| T |
35158171 |
ttttcaaagagggagaagcaagcaaaacactgttttaaataagaaggtaattgatcataacttaatttgattgctggtaaaatgtcctcgtctttttgcg |
35158072 |
T |
|
| Q |
216 |
gtaaattccaaatctcactgtc |
237 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
35158071 |
gtaaattccaaatctcattgtc |
35158050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University