View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10820_low_11 (Length: 250)
Name: NF10820_low_11
Description: NF10820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10820_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 4343013 - 4343246
Alignment:
| Q |
4 |
aatactgagaagttatgagtaatattgttatgagtagattatcatcatttgaatgctgagaagttatgagttaagtttcctaatagatattgtacttgct |
103 |
Q |
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| T |
4343013 |
aatactgagaagttatgagtaatattgttatgagtagattatcatcaattgaatgctgagaagttatgagttaagtttcctaatagatattgtacttgct |
4343112 |
T |
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| Q |
104 |
gcagttactgctctgtcgtctctcatacaatcctggaaaaacaaaccattaaattgggtgggctctgatccttgtggaagtgattgggatggaattcgtt |
203 |
Q |
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| T |
4343113 |
gcagttactgctctgtcgtctctcatacaatcctggaaaaacaaaccattaaattgggtgggctctgatccttgtggaagtgattgggatggaattcgtt |
4343212 |
T |
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| Q |
204 |
gctccaattcaagaataactgaattgttagatct |
237 |
Q |
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| T |
4343213 |
gctccaattcaagaataactgaattgttagatct |
4343246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 76 - 237
Target Start/End: Original strand, 4361224 - 4361384
Alignment:
| Q |
76 |
aagtttcctaatagatattgtacttgctgcagttactgctctgtcgtctctcatacaatcctggaaaaacaaaccattaaattgggtgggctctgatcct |
175 |
Q |
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||||||||||||||| |||| || |||||||||||||||| || ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||||| |
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| T |
4361224 |
aagtttcctaatagaagttgttatt-ctgcagttactgctctttcttctctcacacaatcctggaacaacagaccatcaaattgggtggggtctgatcct |
4361322 |
T |
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| Q |
176 |
tgtggaagtgattgggatggaattcgttgctccaattcaagaataactgaattgttagatct |
237 |
Q |
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| T |
4361323 |
tgtggcagtaattgggctggaattggttgtgacaattcaagaattaccgaattgttagatct |
4361384 |
T |
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