View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10820_low_12 (Length: 239)
Name: NF10820_low_12
Description: NF10820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10820_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5955309 - 5955087
Alignment:
| Q |
1 |
tgtttagaggagcaacagaagggtttaaggaacttggttattcaaggaacgatcctgtttttgcaatgcgcggatcgatgcattcgattcaaagagatat |
100 |
Q |
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| T |
5955309 |
tgtttagaggagcaacagaagggtttaaggaacttggttattcaaggaacgatcctgtttttgcaatgcgcggatcgatgcattcgattcaaagagatat |
5955210 |
T |
|
| Q |
101 |
gatcatgctagaaaatcagcttccccttttcatactagatttgcttctgggaattcagattggtaaaccagatttaaaaggacttgttgcaaatctagca |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5955209 |
gatcatgctagaaaatcagcttccccttttcatactagatttgcttctgggaattcagattggtaaaccagatttgaaaggacttgttgcaaatctagca |
5955110 |
T |
|
| Q |
201 |
ctcagattcttcgaccctttaat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
5955109 |
ctcagattcttcgaccctttaat |
5955087 |
T |
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