View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10820_low_14 (Length: 232)
Name: NF10820_low_14
Description: NF10820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10820_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 30087588 - 30087742
Alignment:
| Q |
19 |
cttaggtcctgagttacctgcagaagatgaaacaacaatccctttctccatagctgcaaaagaagctattgctatagcatcttcataatgtggaatatca |
118 |
Q |
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| T |
30087588 |
cttaggtcctgagttacctgcagaagatgaaacaacaatccctttctccatagctgtaaaagaagctattgctatagcatcttcataaagtggaatacca |
30087687 |
T |
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| Q |
119 |
tcaattccaatagaaattgaaatcacgtcaacaccatcaataattgcttggtcca |
173 |
Q |
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| T |
30087688 |
tcaattccaatagaaattgaaatcacgtcaacaccatcaataattgcttggtcca |
30087742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 30091568 - 30091722
Alignment:
| Q |
19 |
cttaggtcctgagttacctgcagaagatgaaacaacaatccctttctccatagctgcaaaagaagctattgctatagcatcttcataatgtggaatatca |
118 |
Q |
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| T |
30091568 |
cttaggtcctgagttacctgcagaagacgaaacaacaatccctttctccatagctgcaaaagaagctattgctatagcatcttcataaagtggaacacca |
30091667 |
T |
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| Q |
119 |
tcaattccaatagaaattgaaatcacgtcaacaccatcaataattgcttggtcca |
173 |
Q |
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| T |
30091668 |
tcaaatcccatagaaattgaaatcacatcaacaccatcagcaatagcttggtcca |
30091722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 30099342 - 30099191
Alignment:
| Q |
22 |
aggtcctgagttacctgcagaagatgaaacaacaatccctttctccatagctgcaaaagaagctattgctatagcatcttcataatgtggaatatcatca |
121 |
Q |
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| T |
30099342 |
aggtcctgcgttacctgcagaagatgaaacaacaatccctttttccatagctgcaaatgaagctattgctataggatcttcataaagtggaacatcatca |
30099243 |
T |
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| Q |
122 |
attccaatagaaattgaaatcacgtcaacaccatcaataattgcttggtcca |
173 |
Q |
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| T |
30099242 |
aatcccattgaaattgaaatcacatcaacaccgtcgttaatagcttggtcca |
30099191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 30087780 - 30087825
Alignment:
| Q |
171 |
ccaaatgactttgtacatagcaatcttcccttttggtgcaatgcct |
216 |
Q |
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| T |
30087780 |
ccaaatgactttgtacatagcaatcttagcttttggtgcaatgcct |
30087825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 30099153 - 30099108
Alignment:
| Q |
171 |
ccaaatgactttgtacatagcaatcttcccttttggtgcaatgcct |
216 |
Q |
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| T |
30099153 |
ccaaatgactttgtacatagcaatcctagcttttggtgcaatgcct |
30099108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 8946567 - 8946639
Alignment:
| Q |
32 |
ttacctgcagaagatgaaacaacaatccctttctccatagctgcaaaagaagctattgctatagcatcttcat |
104 |
Q |
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| T |
8946567 |
ttacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcat |
8946639 |
T |
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