View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10820_low_15 (Length: 225)
Name: NF10820_low_15
Description: NF10820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10820_low_15 |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 16697902 - 16697753
Alignment:
| Q |
18 |
aaatttttcattcgatactgcttctgcacttaagtattaattctagggaattcacagatactttgatgtcattatgctcgttcagttttatatggatgtc |
117 |
Q |
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| T |
16697902 |
aaatttttcattcgatactgcttctgcacttaagtattaattctagggaattcgcagatacattgatgtcattatgctcgttcagttttatatggatgtc |
16697803 |
T |
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| Q |
118 |
taggattatttgcaggagactagaatgaaacatgaaatatatttgttact |
167 |
Q |
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| T |
16697802 |
taggattatttgcaggagactagaatgaaacatgaaatatatttgttact |
16697753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 16697735 - 16697686
Alignment:
| Q |
166 |
ctctattcggaaatgataccattaatacttctctagttctctctgcttct |
215 |
Q |
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| T |
16697735 |
ctctattcggaaatgataccattaatacttctccagttctctcagcttct |
16697686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 103271 - 103120
Alignment:
| Q |
22 |
ttttcattcgatactgcttctgcacttaagtattaattctagggaattcacagatactttgatgtcattatgctcgttcagttttatatggatgtctagg |
121 |
Q |
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| T |
103271 |
ttttcatttgatactgattctgcactatagtattaattctagggaatttgcagagactttgatgtcattctgctggtttagttttatgtggatgtctggg |
103172 |
T |
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| Q |
122 |
attatttgcaggagactagaatgaaacatgaaatata-tttgttactctattc |
173 |
Q |
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| T |
103171 |
attatttgcaggaga-taagatgaaacataaaatatactttgttactcaattc |
103120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 103108 - 103059
Alignment:
| Q |
166 |
ctctattcggaaatgataccattaatacttctctagttctctctgcttct |
215 |
Q |
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| T |
103108 |
ctctattcggaaatgatacgattaatacttctctagttctctcagcttct |
103059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 38227440 - 38227295
Alignment:
| Q |
22 |
ttttcattcgatactgcttctgcacttaagtattaattctagggaattcacagatactttgatgtcattatgctcgttcagtttt--atatggatgtcta |
119 |
Q |
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| T |
38227440 |
ttttcattcgatactgcttctacattgtagtatta-ttctagggaattcgcagagactttgatgtcattctgctggttcagtttttcatatgggtgtctg |
38227342 |
T |
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| Q |
120 |
ggattatttgcaggagactagaatgaaacatgaaatatatttgttact |
167 |
Q |
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| T |
38227341 |
ggattgtttgcaggtga-tagaatgaaacatagaatatatttgttact |
38227295 |
T |
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