View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10820_low_2 (Length: 371)
Name: NF10820_low_2
Description: NF10820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10820_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 29490082 - 29490428
Alignment:
| Q |
19 |
tctacatgtgttcagttaccgtcttctcaccgcacacaaccttgatccggtgactgtctagtaaatgtccttgtccaactagaacatttcagaatattct |
118 |
Q |
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| T |
29490082 |
tctacatgtgttcagtcagagtcttctcaccgcacacaaccttgatccggtgattgtctagtaaatgtccctgtccaactagaacatttcagaatattct |
29490181 |
T |
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| Q |
119 |
atatgcttcaaatattaggtnnnnnnnnccactaactttatatataacatgctttatattgttcaaaaagtgacaacctataattcactta------gga |
212 |
Q |
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| T |
29490182 |
atatccttcgaatattaggtaaaaaaaaccactaactttataaataacatgctctatattgttcacaa-gtaacaacctataattcactttcacttggga |
29490280 |
T |
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| Q |
213 |
tttagtgattctctacaatcatggcaactgaggtggttttgttggatacatgggttagcatgtttggtatgagggttaggattgcattagctgaaaaggg |
312 |
Q |
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| T |
29490281 |
tttagtgattctctacaatcatggcaaacgaggtagttttgttggatacatgggttagcatgtttggtatgagggttagaattgcattagctgaaaaggg |
29490380 |
T |
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| Q |
313 |
agttcaatatgagtacaaagaagaaaatcttagagataaaagtcctat |
360 |
Q |
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| T |
29490381 |
agttcaatatgagtacaaagaagaaaatcttagagataaaagtcctat |
29490428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 226 - 358
Target Start/End: Original strand, 29488197 - 29488329
Alignment:
| Q |
226 |
tacaatcatggcaactgaggtggttttgttggatacatgggttagcatgtttggtatgagggttaggattgcattagctgaaaagggagttcaatatgag |
325 |
Q |
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| T |
29488197 |
tacaatcatggcaaacgaggtaattctgttagatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgag |
29488296 |
T |
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| Q |
326 |
tacaaagaagaaaatcttagagataaaagtcct |
358 |
Q |
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| T |
29488297 |
tacaaagaagaagatctcagaaataagagtcct |
29488329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 199 - 358
Target Start/End: Original strand, 29502368 - 29502527
Alignment:
| Q |
199 |
taattcacttaggatttagtgattctctacaatcatggcaactgaggtggttttgttggatacatgggttagcatgtttggtatgagggttaggattgca |
298 |
Q |
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| T |
29502368 |
taattaacataggatttagtgatcttcaagagtcatggcaaacgaagtggttctgttggatacatggtttagcatgtttgggatgagagttaagattgca |
29502467 |
T |
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| Q |
299 |
ttagctgaaaagggagttcaatatgagtacaaagaagaaaatcttagagataaaagtcct |
358 |
Q |
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| T |
29502468 |
ttagctgaaaaaagtgttaaatacgagtgtaaagaagaaaatctcagaaataagagtcct |
29502527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 226 - 358
Target Start/End: Complemental strand, 30256874 - 30256742
Alignment:
| Q |
226 |
tacaatcatggcaactgaggtggttttgttggatacatgggttagcatgtttggtatgagggttaggattgcattagctgaaaagggagttcaatatgag |
325 |
Q |
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| T |
30256874 |
tacaatcatggcaaacgaggtaattctgtcagatacatgggctagcgtgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgag |
30256775 |
T |
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| Q |
326 |
tacaaagaagaaaatcttagagataaaagtcct |
358 |
Q |
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| T |
30256774 |
tacaaagaagaagatcttagaaataagagtcct |
30256742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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