View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10820_low_5 (Length: 329)
Name: NF10820_low_5
Description: NF10820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10820_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 39543242 - 39543539
Alignment:
| Q |
19 |
cccccatccaaaatcaaccttcgactctggaaacctctgccctgaagataccacaaatgttggtccttcttctccaccagtgctgccacaataaatccta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543242 |
cccccatccaaaatcaaccttcgactctggaaacctctgccctgaagataccacaaatgttggtccttcttctccaccagtgctgccacaataaatccta |
39543341 |
T |
|
| Q |
119 |
gccaatcccggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctctgtcaccgccgcctccaaaaactcatgaactcgatctg |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | |
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| T |
39543342 |
gccaatccaggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctctgtcactgctgcctccaaaaactcatgaactcgatcag |
39543441 |
T |
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| Q |
219 |
ccacccaacataacggattatcaaccagctcttctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttct |
316 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543442 |
ccacccaacatagcggattatcaaccagctcttctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttct |
39543539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 39553261 - 39553558
Alignment:
| Q |
19 |
cccccatccaaaatcaaccttcgactctggaaacctctgccctgaagataccacaaatgttggtccttcttctccaccagtgctgccacaataaatccta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553261 |
cccccatccaaaatcaaccttcgactctggaaacctctgccctgaagatacaacaaatgttggtccttcttctccaccagtgctgccacaataaatccta |
39553360 |
T |
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| Q |
119 |
gccaatcccggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctctgtcaccgccgcctccaaaaactcatgaactcgatctg |
218 |
Q |
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| T |
39553361 |
gccaatccaggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctctgtcactgctgcctccaaaaactcatgaactcgatcag |
39553460 |
T |
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| Q |
219 |
ccacccaacataacggattatcaaccagctcttctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttct |
316 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553461 |
ccacccaacatagcggattatcaaccagctcttctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttct |
39553558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 39586368 - 39586665
Alignment:
| Q |
19 |
cccccatccaaaatcaaccttcgactctggaaacctctgccctgaagataccacaaatgttggtccttcttctccaccagtgctgccacaataaatccta |
118 |
Q |
| |
|
||||||||| ||||| ||||||||||||| |||||| ||||| ||||| ||||||||||| ||||| ||| |||||||||| || ||||||||||| |
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| T |
39586368 |
cccccatccgaaatctaccttcgactctgaaaacctttgcccagaagacaccacaaatgtcggtccatctgctccaccagttactccgcaataaatcctt |
39586467 |
T |
|
| Q |
119 |
gccaatcccggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctctgtcaccgccgcctccaaaaactcatgaactcgatctg |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || || || |||| |||||| ||||||||||||| | |||| |
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| T |
39586468 |
gccaatcccggaaccggtcgatgctcttccacccaatcaattagtcccaagaaatgttcttccgtgtccgcaacctccacaaactcatgaacttgctctg |
39586567 |
T |
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| Q |
219 |
ccacccaacataacggattatcaaccagctcttctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttct |
316 |
Q |
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|||||||||||||| || ||||| || |||||| |||||||| || ||||||| | |||||||||||||||||||| ||| |||||| ||||||| |
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| T |
39586568 |
tcacccaacataacgacttttcaacaagttcttctattaatctacaactatagggagttgaaagcacattcccaaaatacgaactcataaactcttct |
39586665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 17503158 - 17503234
Alignment:
| Q |
104 |
ccacaataaatcctagccaatcccggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctc |
180 |
Q |
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|||| ||||||| | |||||||| ||||| |||||||| |||||||||||||||| || || | |||||| ||||| |
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| T |
17503158 |
ccactataaatcttcgccaatccaggaacaggtcgatgtgcttccacccaatcaatgagccctaggaaatgttcctc |
17503234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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