View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10820_low_7 (Length: 299)
Name: NF10820_low_7
Description: NF10820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10820_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 283
Target Start/End: Original strand, 23334024 - 23334301
Alignment:
| Q |
5 |
gagactttgatgagaaacacactgctttaattgatgcatatgttacaatttaattgtcaaactattttgaaaaaaccatgtttccacgcgtagagttttt |
104 |
Q |
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| T |
23334024 |
gagactttgatgagaaacacactgctttaattgatgcatatgttacaatttaattgtcaaactattttgaaaaaaacatgtttccacgcgtagagttttt |
23334123 |
T |
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| Q |
105 |
gaggaaatctattcatccttcgtatagatttgtaattttaccgtcattaaaccaacaaccaggacccctttcctcattgaatccgtgggttnnnnnnnnn |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
23334124 |
gaggaaatctattcatccttcgtatagatttgtaattttaccgtcattaaaccaacaaccagggcccctttcctcagtgaatccgtgggtt-aaaaaaaa |
23334222 |
T |
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| Q |
205 |
cttgaaaacaagcaaggagattgagaaaaggggtacatcttacaactaacaaccaactttgttcatgtcatgtgagtat |
283 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23334223 |
cttgaaaacaagcaaggagattgaaaaaaggggtacaacttacaactaacaaccaacttcgttcatgtcatgtgagtat |
23334301 |
T |
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