View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_high_11 (Length: 344)
Name: NF10821_high_11
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 21779381 - 21779070
Alignment:
| Q |
1 |
aaggacagagaaagaatattgaaccttatccacaatgccacccaatattattannnnnnnnnnnnnnnnnnaacaacaagaataaagaaaagcttcatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21779381 |
aaggacagagaaagaatattgaaccttatccacaatgccacccaatattattattttttcttcttttttt-aacaacaagaataaagaaaagcttcatat |
21779283 |
T |
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| Q |
101 |
gaagctctttataaaagcaagacaaaggcatgtcattgtggaaccaccattaacaacgtaggagaaagaaaaaataaaccattgatcatatgcaactaaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21779282 |
gaagctctttataaaagcatgacaaaggcatgtcattgtggaaccaccattaacaacgtaggagaaagaaaaaataaaccattgatcatatgcaactaaa |
21779183 |
T |
|
| Q |
201 |
cacacacatatactatatatattagtgatnnnnnnncattgtattttaacttccaaaaccaacatggcaaacaataagggttactttgcaagaagaaacc |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21779182 |
cacacacatatactatatatattagtgataaaaaaacattgtattttaacttccaaaaccaacatggcaaacaataagggttactttgcaagaagaaacc |
21779083 |
T |
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| Q |
301 |
acctctttctttc |
313 |
Q |
| |
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||||||||||||| |
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| T |
21779082 |
acctctttctttc |
21779070 |
T |
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