View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10821_high_13 (Length: 322)
Name: NF10821_high_13
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_high_13 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 13218173 - 13218407
Alignment:
| Q |
20 |
cttaggtgcccattttgtatgggcttttagtttaatgtttctattcagcgggcgtggttattggcaagaacttatcgaatccatcgtttgggctcataat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13218173 |
cttaggtgcccattttgtatgggcttttagtttaatgtttctattcagcgggcgtggttattggcaagaacttattgaatccatcgtttgggctcataat |
13218272 |
T |
|
| Q |
120 |
aaattaaaagttgctcctgctactcagcctagagccttgagcattgtacagggacgtgctgtaggagtaacccattaccttctgggtggaattgccacaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13218273 |
aaattaaaagttgctcctgctactcagcctagagccttgagcattgtacagggacgtgctgtaggagtaacccattaccttctgggtggaattgccacaa |
13218372 |
T |
|
| Q |
220 |
cgtgggcattcttcttagcaagaattattgcagta |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
13218373 |
cgtgggcattcttcttagcaagaattattgcagta |
13218407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 54180961 - 54180853
Alignment:
| Q |
20 |
cttaggtgcccattttgtatgggcttttagtttaatgtttctattcagcgggcgtggttattggcaagaacttatcgaatccatcgtttgggctcataat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
54180961 |
cttaggtgcccattttgtatgggcttttagtttaatgtttctattcagcgggcgtggttattggcaagaacttattgaatccatcgtttgggctcataat |
54180862 |
T |
|
| Q |
120 |
aaattaaaa |
128 |
Q |
| |
|
||||||||| |
|
|
| T |
54180861 |
aaattaaaa |
54180853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 239536 - 239302
Alignment:
| Q |
20 |
cttaggtgcccattttgtatgggcttttagtttaatgtttctattcagcgggcgtggttattggcaagaacttatcgaatccatcgtttgggctcataat |
119 |
Q |
| |
|
||||||||| |||||||| ||||| || |||||||||||| |||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
239536 |
cttaggtgctcattttgtctgggccttcagtttaatgtttttattcagcggccgtggttattggcaagaactcattgaatctatcgtttgggctcataac |
239437 |
T |
|
| Q |
120 |
aaattaaaagttgctcctgctactcagcctagagccttgagcattgtacagggacgtgctgtaggagtaacccattaccttctgggtggaattgccacaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
239436 |
aaattaaaagttgctcctgctactcagcctagagccttgagcattatacaaggacgtgctgtaggagtaacccattaccttctgggtggaattgccacga |
239337 |
T |
|
| Q |
220 |
cgtgggcattcttcttagcaagaattattgcagta |
254 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
239336 |
catgggcattcttcttagcgagaattattgcagta |
239302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 45273528 - 45273434
Alignment:
| Q |
52 |
taatgtttctattcagcgggcgtggttattggcaagaacttatcgaatccatcgtttgggctcataataaattaaaagttgctcctgctactcag |
146 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45273528 |
taatgtttctattcagcggccgtggttattggcataaacttattgaatccatcgtttgggctcataataaattaaaagttgctcctgttactcag |
45273434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 45269966 - 45269877
Alignment:
| Q |
52 |
taatgtttctattcagcgggcgtggttattggcaagaacttatcgaatccatcgtttgggctcataataaattaaaagttgctcctgcta |
141 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
45269966 |
taatgtttctattcatcgggcgtggttattggcaagaacttatagaatccatcgtttgggctcataataaattaaaaggttctcctgcta |
45269877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 28243343 - 28243425
Alignment:
| Q |
74 |
tggttattggcaagaacttatcgaatccatcgtttgggctcataataaattaaaagttgctcctgctactcagcctagagcct |
156 |
Q |
| |
|
||||||| | ||| ||||| | |||||| || |||||| ||||||||||||| ||| ||||||| ||||||| |||||||||| |
|
|
| T |
28243343 |
tggttatcgccaaaaacttgttgaatccgtcatttggggtcataataaattataagctgctcctactactcaacctagagcct |
28243425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University