View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10821_high_2 (Length: 505)

Name: NF10821_high_2
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10821_high_2
NF10821_high_2
[»] chr4 (1 HSPs)
chr4 (1-505)||(6119013-6119517)


Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 6119013 - 6119517
Alignment:
Q  1 accaccgcctctgaaaattcaccttctaaagcaagcatcaccgaactccccgccgacggataatttctcggtccacccgttaactccgggtaaacccgaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6119013 accaccgcctctgaaaattcaccttctaaagccagcatcaccgaactccccgccgacggataatttctcggtccacccgttaactccgggtaaacccgaa 6119112  T
Q  101 ccacacgattttcgttaaaatcatacataatcgatttcgtgttcgcgaacacgaaaaggataccgttaggaaggagatgaacatacgggtataaattatc 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  6119113 ccacacgattttcgttaaaatcatacataaccgatttcgtgttcgcgaacacgaaaagtttaccgttaggaaggagatgaacatacgggtataaattatc 6119212  T
Q  201 catttgtgtatcttcagtttcttgcagaaacggaaacaaaacgacaccattttcacgtttcgggtaaaattcaactgtgtttgaacctcttccaccgatg 300  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6119213 catttgtgtatcttcagtttcttgtagaaacggaaacaaaacgacaccgttttcgcgtttcgggtaaaattcaactgtgtttgaacctcttccaccgatg 6119312  T
Q  301 atgatgacagaaccatctggaagaatttgattcgtcgcataccaacgaccttcgcttaattcgacgtcgtttaactcttcccaatcgcaagacccggttg 400  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6119313 atgatgatggaaccatctggaagaatttgattcgtcgcataccaacgaccttcgcttaattcgacgtcgtttaactcttcccaatcgcaagacccggttg 6119412  T
Q  401 aatcacacgggttgaatattcggatctttttaaacccgtctaaatcaccaccggtttgtaagagtgaaccgtttgggagaaatgaaccggacgagcacca 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6119413 aatcacacgggttgaatattcggatctttttaaacccgtctaaatcaccaccggtttgtaagagtgaaccgtttgggagaaatgaaccggacgagcacca 6119512  T
Q  501 tgtgt 505  Q
    |||||    
T  6119513 tgtgt 6119517  T

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